Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04855 ATGAACCACTGTGTTCCAGATTTCGAAATCCAAATGGATGACCAAGACTACCCGTTATCCATGCCTTCAGCTTCAGGAACAAAGAAACCCTCCATTGCAGACGACGACATCATGGAGCTGCTATGGCAAAACGGCCAGGTCGTGATGCAAAGCCAAAACCAGCGGAGAAAACCGCCGCCGGCGAGAAACTCCGACGATGCTACTCTCGCCGGAACATCCAGGGAGGTAGAAAACTACAACAACCAGCATCTCTTTATGCAAGAAGGCGAAATGGCTGCGTGGCTTCACTATCCAATCGACAACGATCCTTCTTCTTTGGATCAGAGCTTCAGCGCCGATTTGTTCTACCCGCCGCCGACGGTTAACAACAACAGTGCCATGCAAACTCCTCCCCGTACGTCTCAACTCACGGAGCTCCGGCAGCCGCCGATGTCGGTGGCGGCTGCACGACCTCCGATTCCGCCGCCGAGGAGGCCGCCGGATTTGGCGCCGCCAAGGACGCAGAACTTCGCGTGCTTATGGAAGCACAATGCGAGAGCCGAGCCAGGACCGTCGTCGATTTCGAGGACCGCCGCGAGGGAATACACGGTGGTGGATTCGTGCGACACGCCTGCAGCGGCGGCGCCGGCTCCGGGAGCGGCGAATTCGATGGTTTCTGAAACTGTAAGAAGCTCGGCAGAGCCTACGGAAGGAGCCACCGCTGGCGTACCTTCGACGACGTGCGATGAACCGGGCGGTTCGAGTAGCAGCGGTGAACCGGTTCAGAAGGTGGCGGCGCGGGACCGGAAGCGGAGGGGAAGGGAAGCAGAGGAATGGGAGTGTCAAAGCGAGGATGTTGATTTTGAATCTGGGGAAGCAAAGAAACAAGTTCATGGATCGGCATCTACAAAGAGATCTCGTGCTGCTGAGGTCCATAATCTCTCAGAGAGGAGGCGACGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGTTGTAATAAGTCTGATAAAGCTTCAATGCTAGATGAAGCAATTGAATACTTGAAGTCGCTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCCCCAATTGGAATGGGGATTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGACCAGTAATGCCATTTCCCAATATGTTACCTGGTTCGGCTTTGCCAGCAGCTGCTCATTTGGGATCAAGGTTCGGTATGCCTCCTTTCCACATGCCACATGTTCTTGCACCTGATTCATCTAGAATGCAAGCAGCAAATCAAACAGATAATAGTATCCTCACCTCAAGTGGTACACCTGATCCAAATCAGTCACGTATCCCAAACTTCCCTGATACTTATCAACAATACCTTGGTCCCCACCAGATGCAGTTTCAATTAATGCAGAATCAGGCGATGAACCATCCAAATGTTAGCAAGCCAAGTACCAGTAAGGGCCCTGAGAATCCAGAAAACCATCAGTCAGGTGAATTATTTTTATCTTAG 1542 0.5162 MNHCVPDFEIQMDDQDYPLSMPSASGTKKPSIADDDIMELLWQNGQVVMQSQNQRRKPPPARNSDDATLAGTSREVENYNNQHLFMQEGEMAAWLHYPIDNDPSSLDQSFSADLFYPPPTVNNNSAMQTPPRTSQLTELRQPPMSVAAARPPIPPPRRPPDLAPPRTQNFACLWKHNARAEPGPSSISRTAAREYTVVDSCDTPAAAAPAPGAANSMVSETVRSSAEPTEGATAGVPSTTCDEPGGSSSSGEPVQKVAARDRKRRGREAEEWECQSEDVDFESGEAKKQVHGSASTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPIGMGIGMGMGMEMGMNRPVMPFPNMLPGSALPAAAHLGSRFGMPPFHMPHVLAPDSSRMQAANQTDNSILTSSGTPDPNQSRIPNFPDTYQQYLGPHQMQFQLMQNQAMNHPNVSKPSTSKGPENPENHQSGELFLS. 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04855 513 MobiDBLite consensus disorder prediction 443 464 - -
Seca1g04855 513 CDD bHLH_AtPIF_like 300 363 IPR047265 -
Seca1g04855 513 MobiDBLite consensus disorder prediction 119 141 - -
Seca1g04855 513 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 298 366 IPR036638 GO:0046983
Seca1g04855 513 Gene3D - 295 358 IPR036638 GO:0046983
Seca1g04855 513 Pfam Helix-loop-helix DNA-binding domain 304 350 IPR011598 GO:0046983
Seca1g04855 513 PANTHER TRANSCRIPTION FACTOR PIF3 24 459 IPR044273 GO:0003700|GO:0006355
Seca1g04855 513 FunFam Basic helix-loop-helix transcription factor 295 358 - -
Seca1g04855 513 MobiDBLite consensus disorder prediction 207 313 - -
Seca1g04855 513 MobiDBLite consensus disorder prediction 119 166 - -
Seca1g04855 513 SMART finulus 306 355 IPR011598 GO:0046983
Seca1g04855 513 MobiDBLite consensus disorder prediction 256 272 - -
Seca1g04855 513 MobiDBLite consensus disorder prediction 1 31 - -
Seca1g04855 513 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 349 IPR011598 GO:0046983
Seca1g04855 513 MobiDBLite consensus disorder prediction 486 513 - -
Seca1g04855 513 MobiDBLite consensus disorder prediction 217 254 - -
Seca1g04855 513 MobiDBLite consensus disorder prediction 147 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04855 Seca-Chr1 151094605 151101615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04855 1 355 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 40.909 5.83e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g04855 HLH 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04855 - - gmx:100797225 644.425