Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04854 ATGGCACCTCAAAACTTGGGCACCCAATTAACAGCACTTGTTGTAGATGACAATAAAATCAACCGAAAGATTCATCAACAACTGTTGAATAGTGTTGGAGTGAAAAATCAAGGAGTGAAAAATGGAAAAGAAGCAGTGGACATTCATTGGGATGGACAAAGATTTGACATCATTCTCATGGACATGGATATGCCTATCATGAATGGCATTGAGGCAACAAAAAAACTTCGATCAATGGGCATTCATAGCATGATTGTTGGAGTGTCATCACGCTCTATGGAAGCGGAAATAAACAAGTTTATGGAAGCAGGGCTGAATGACTACAAAGAGAAACCCTTGGATGCTCAAAAGCTTAATCTAGGAGAAATGAAGGACAACATGAAAGTCATGGAAGCTTGTAAGCTAACAGCACTTGTTGTTGATGATGACACAATGGTCCGAATGGTTCATGGAAAGATGTTGAACAGTGTTGGAGTGAAAATTCAAGTCGTGGAAAATGGCAAAGAAGCCATTGACATTCACCATTCTGGACAAAGTTTTGACTTGATTCTCATGGATATGGACATGCCTATTATGAATGGCATTGAGGTAATTATCTATACATGCATTTCATATACTAAAACAATATGTTACAATTAA 639 0.3787 MAPQNLGTQLTALVVDDNKINRKIHQQLLNSVGVKNQGVKNGKEAVDIHWDGQRFDIILMDMDMPIMNGIEATKKLRSMGIHSMIVGVSSRSMEAEINKFMEAGLNDYKEKPLDAQKLNLGEMKDNMKVMEACKLTALVVDDDTMVRMVHGKMLNSVGVKIQVVENGKEAIDIHHSGQSFDLILMDMDMPIMNGIEVIIYTCISYTKTICYN. 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04854 212 SMART REC_2 10 122 IPR001789 GO:0000160
Seca1g04854 212 SMART REC_2 135 209 IPR001789 GO:0000160
Seca1g04854 212 SUPERFAMILY CheY-like 10 118 IPR011006 -
Seca1g04854 212 CDD REC_hyHK_CKI1_RcsC-like 138 196 - -
Seca1g04854 212 PANTHER TWO-COMPONENT RESPONSE REGULATOR 136 198 - -
Seca1g04854 212 ProSiteProfiles Response regulatory domain profile. 136 212 IPR001789 GO:0000160
Seca1g04854 212 CDD REC_hyHK_CKI1_RcsC-like 13 118 - -
Seca1g04854 212 Gene3D - 132 204 - -
Seca1g04854 212 ProSiteProfiles Response regulatory domain profile. 11 126 IPR001789 GO:0000160
Seca1g04854 212 Pfam Response regulator receiver domain 13 118 IPR001789 GO:0000160
Seca1g04854 212 Pfam Response regulator receiver domain 138 198 IPR001789 GO:0000160
Seca1g04854 212 Gene3D - 2 131 - -
Seca1g04854 212 SUPERFAMILY CheY-like 135 198 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04854 Seca-Chr1 151047907 151056688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04854 138 195 Response Regulator Gene Family AT3G04280 44.068 2.16e-10 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca1g04854 Response_reg 1.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04854 - - gmx:100794931 187.963