Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04840 ATGGCTTCTGCCGCCAATCCTGTAGTTGGGTCCCATGTTTGGGTGGAGGATTCTGATGTAGCTTGGATAGATGGCGAGGTCTTGGAGGTTAAAGGACAAGAAACTAAAGTCCTTTGCACTTCAGGGAAGACGGTTGTTGTTAAAGCTTCCAGTATTTATCATAAAGATACGGAAGTCCCACCAAGTGGAGTGGATGATATGACAAAGCTTACGTACCTGCATGAACCTGGAGTCCTAGATAATCTGAGATCAAGATATGATATTAATGAAATTTATACTTACACTGGGAATATATTGATTGCTGTGAACCCTTTCATAAAGCTTCCTCATTTATATGATAGCCATATGATGGCACAATATAAAGGAGCAGCTTTTGGTGAGTTAAGTCCACATCCCTTTGCTGTTGCAGATGCAGCGTATAGGCTTATGATGAATGAGGGAATCAGCCAGTCAATATTGGTTAGTGGTGAAAGTGGGGCTGGTAAAACGGAAAGTACCAAGTTACTCATGCGGTATCTTGCTTACATGGGAGGGAGAGCTGCTGCTGAAGGCAGAACTGTTGAGCAAAAAGTCCTAGAGTCCAATCCTGTGTTAGAAGCCTTTGGCAATGCAAAGACTGTTAGGAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGATCAGAGGGGAAGAATATCTGGTGCTGCTATCAGAACTTATCTGTTGGAAAGATCACGTGTTTGCCAGGTGTCAGATCCAGAGAGGAGTTATCATTGTTTCTACATGCTATGTGCTGCACCTCCGGAGGATGTTAAGAAATACAAATTAGGACATCCAAGAACATTTCATTATCTGAATCAATCAAATTGCTATGAGTTGGAAGGGGTTGATGAATCTAAAGAATATAGTGCTACAAGGAGAGCAATGGATGTTGTTGGAATAAGTTCTGAGGAGCAGGATGCAATATTTCAAGTTATTGCTGCAATTTTGCATCTTGGGAACATTGAATTTGTGAAAGGGAAGGAGATAGATTCATCTATGCCCAAAGATGAAAAATCCCGGTTCCATCTACAGACTGCAGCTGAGCTTTTCATGTGTGACCCAAAGGCACTTGAAGATTCCCTTTGCAAACGTGTAATTGTTACTCGTGATGAAACGATTACAAAATGGCTGGATCCAGAAGCTGCTGCACTCAGCCGAGATGCGTTGGCTAAGATAGTATACACTAGGTTGTTTGACTGGTTGGTTGATAAAATAAATAGTTCCATTGGTCAAGACCCTGAGTCAAAATCCTTAATTGGAGTGCTGGATATTTACGGTTTTGAGAGTTTCAAGTCTAACAGTTTTGAGCAATTTTGTATTAATTTGACCAATGAAAAGCTTCAGCAACATTTCAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAAGAGATTGATTGGAGTTACATTGAATTTGTGGACAATCAAGATATTCTGGATCTTATTGAAAAGAAACCTGGTGGCATTATTGCTCTTCTGGACGAAGCTTGTATGTTTCCTCGATCAACACATGAAACTTTTGCCCAAAAGCTGTATCAGACCTTCAAAAACCATAAAAGGTTTAGCAAGCCCAAATTATCACGTAGTGACTTTACAATTTGCCATTATGCTGGTGATGTCACTTATCAAACTGAATTGTTCCTCGACAAGAACAAAGATTATGTTGTTGCAGAGCACCAGGCACTTCTTCATGCTTCCAAATGCCCCTTTGTATCAGCCTTATTTCCCCCTTCACCTGAGGAATCTTCCAAACAATCAAAGTTCTCTTCAATAGGTTCCCGATTTAAGCAACAATTGCAAGCTTTACTTGAAACTCTGAGTTCCACTGAGCCACACTACATTCGATGTGTAAAACCCAATAATCTTCTTAAGCCAGCAATTTTTGAGAATAAAAATGTTTTGCTGCAACTGCGTTGTGGGGGAGTCATGGAGGCAATTAGGATAAGCTGTGCCGGGTTTCCCACTAGAAAAACCTTTGATGAGTTTGTGGATCGATTTGGCCTGCTTGCACCTGAAGCATTGGATGGAAGTTCTGATGAGGTAACTGCTTGCAAGAGGATCCTAAAGAATGTTGGACTTGAAGGCTATCAGATTGGTAAAACTAAGGTGTTTCTTCGAGCTGGTCAAATGGCAGAACTAGATACCCGAAGAAGTGAGATCTTGGGAAAGTCAGCAAGCATTATTCAGAGGAAAGTCCGTTCCTATTTGGCCCGCCAAAGTTTCATCTTGCTTCGTTTATCAGCTATGCAGATTCAAGCTGCATGCAGAGGACAACTTGCTAGGCAAGTTTATGAGGGAATGCGGCAGGAGGCTTCTAGTCTGCTGATTCAAAGGTATTTCCGCATGCATATTGCTAGGAAGACATACAAAGAATTGTATGCCTCTGCTGTCTCTATCCAGACTGGAATGCGGGCGATGGTTGCTCGTTGTGAGCTACACTTTAGAAGGCAGACTAGAGCAGCAATTGTCATTCAGAGCTACTGCAGGAAATACCTGGCACGACTTCATTTCATGAAATTAAAGAAGGCAGCAATTACAACACAATGTGCATGGAGAGGAAAAGTTGCTCGGCGAGAATTGCGGAAGCTCAAGATAGCTGCAAGAGAAACAGGAGCTCTCCAAGCTGCCAAAAATAAGCTTGAAAAGCAAGTTGAAGACCTTACATTAAGGTTACAGCTGGAAAAACGTTTGAGGGTGGACATGGAAGAAACAAAAGCAAAAGAAAATGAAAGATTACAGTCAGCTTTGCAAGAGATGCAACTTCAGTTTAACGAAACTAAATTACTTCTTGAGAAGGAGCGGGAGGCTACAAAAACAGTGGTGGAAAGAGTGCCTGTCATACAGGAGGTTCCAGTTGTTGACCATGCTTTGTTGGAGAAGCTTGGTAGTGAAAATGAGAAACTCAAGAACTTGGTGAGTTCACTGGAAAAGAAAATTGATGAAACAGAAAAAAGGTATGAAGAGGCAAACAGAATCAGTGAAGAAAGGTTGAAGCAAGCTTTGGATGCAGAATCTAAAATAATCCAGTTGAAGACTGCTATGCAAAGGCTTGAAGAGAAATTCACAGACATGGAATCTGCAAACCATATTCTTCAGAAACAATCTCTGCTAAACTCATCTGTAAAAACAATAGCAGAGCACCTCTCTGCTCCCGTAGCTGAGAAGTTAGAAAATGGTCATCATGAGGCAGAAGAACAGAAAGCTGTTGATACATGTGTTACACCTGTGAAACAATTTGGTACAGAATCCGACTCTAAACTGAGGAGATCTTACATTGAAAGACAACATGAGAGTGTTGATTCACTTGTCAACTGTGTTATGAAAAACATTGGCTTCAATCATGGAAAGCCTATTGCTGCATTTACCATTTACAAATGTCTGCTCCACTGGAAATCATTTGAAGCTGAAAGAACTAGTGTATTTGATCGCCTTGTCCAGATGATTGGTTCTGCAATTGAGAATCAAGATGACAATGACCTGATGGCCTATTGGCTGTCAAACACCTCTGCCTTATTGCTTTTACTTGAAGAAAGCCTGAAATCTGGGACTTTAACAAATGCAACCCCGAGTAGAAAACCTCCTAATCCAACATCCCTCTTTGGAAGAATGACTATGGGTAAATTGCAGGGTTTTCTTTCATCCCCTTCTTCTGCTAAACTTGCTGCCCCTCCATCAGAGGTTGTACGCAAGGTGGAGGCTAAATACCCTGCCTTGCTTTTCAAGCAGCAGCTAACAGCCTATTTGGAGAAAATATATGGCATCATTCGGGATAACTTGAAGAAGGAGTTAACATCGGTTCTTGCATTATGTATTCAGGCACCAAGAACATCAAAGGCAGTGTTGCGATCTGGCCGATCCTATGGTAAAGATTCCCCAATGGTTCACTGGAACTGTATTATTGAATCTCTCAACACCCTCCTCTGTACTCTGAAAGAGAACTTTGTGCCTCCAGTTCTTATCCAAAAGATCTTCAGTCAAACATTCTCTTATATTAATGTGCAACTCTTCAATAGTCTTCTCCTCCGTCGCGATTGTTGCACATTCAGCAATGGGGAATATGTGAAAGCTGGATTAGCTGAATTAGAGTTGTGGTGTTGCCAAGCAAAGGAGGAGTATGCAGGGTCATCTTGGGATGAGCTTAAGCACATAAGACAGGCTGTTGGTTTCTTGGTTATTCATCAGAAGTATAGGATATCCTATGATGAAATCATTAATGATTTATGCCCTATCCTGAGTGTCCAGCAGCTGTATAGAATATGTACACTTTACTGGGATGGTAACTACAACACTCGAAGTGTATCACCAGATGTCCTTTCCAGCATGAAGATGCTTATGGCTGAGGACTCCAATAATGCTCAGAGCGATTCGTTCTTGTTGGATGACAGTTCCAGCATCCCCTTCTCAGTGGATGACCTCTCTACATCATTGCAAGATAAGGATTTCTCAGACATGAAACCAGCAGATGAGCTTCTTGAAAATCCAGCCTTCCAGTTTTTAAATGAGTAG 4548 0.4125 MASAANPVVGSHVWVEDSDVAWIDGEVLEVKGQETKVLCTSGKTVVVKASSIYHKDTEVPPSGVDDMTKLTYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMMNEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERSYHCFYMLCAAPPEDVKKYKLGHPRTFHYLNQSNCYELEGVDESKEYSATRRAMDVVGISSEEQDAIFQVIAAILHLGNIEFVKGKEIDSSMPKDEKSRFHLQTAAELFMCDPKALEDSLCKRVIVTRDETITKWLDPEAAALSRDALAKIVYTRLFDWLVDKINSSIGQDPESKSLIGVLDIYGFESFKSNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLHASKCPFVSALFPPSPEESSKQSKFSSIGSRFKQQLQALLETLSSTEPHYIRCVKPNNLLKPAIFENKNVLLQLRCGGVMEAIRISCAGFPTRKTFDEFVDRFGLLAPEALDGSSDEVTACKRILKNVGLEGYQIGKTKVFLRAGQMAELDTRRSEILGKSASIIQRKVRSYLARQSFILLRLSAMQIQAACRGQLARQVYEGMRQEASSLLIQRYFRMHIARKTYKELYASAVSIQTGMRAMVARCELHFRRQTRAAIVIQSYCRKYLARLHFMKLKKAAITTQCAWRGKVARRELRKLKIAARETGALQAAKNKLEKQVEDLTLRLQLEKRLRVDMEETKAKENERLQSALQEMQLQFNETKLLLEKEREATKTVVERVPVIQEVPVVDHALLEKLGSENEKLKNLVSSLEKKIDETEKRYEEANRISEERLKQALDAESKIIQLKTAMQRLEEKFTDMESANHILQKQSLLNSSVKTIAEHLSAPVAEKLENGHHEAEEQKAVDTCVTPVKQFGTESDSKLRRSYIERQHESVDSLVNCVMKNIGFNHGKPIAAFTIYKCLLHWKSFEAERTSVFDRLVQMIGSAIENQDDNDLMAYWLSNTSALLLLLEESLKSGTLTNATPSRKPPNPTSLFGRMTMGKLQGFLSSPSSAKLAAPPSEVVRKVEAKYPALLFKQQLTAYLEKIYGIIRDNLKKELTSVLALCIQAPRTSKAVLRSGRSYGKDSPMVHWNCIIESLNTLLCTLKENFVPPVLIQKIFSQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPILSVQQLYRICTLYWDGNYNTRSVSPDVLSSMKMLMAEDSNNAQSDSFLLDDSSSIPFSVDDLSTSLQDKDFSDMKPADELLENPAFQFLNE. 1516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04840 1515 ProSiteProfiles IQ motif profile. 831 860 IPR000048 GO:0005515
Seca1g04840 1515 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Seca1g04840 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 883 IPR027417 -
Seca1g04840 1515 CDD MYSc_Myo11 76 720 IPR036018 -
Seca1g04840 1515 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Seca1g04840 1515 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca1g04840 1515 Gene3D - 735 784 - -
Seca1g04840 1515 Gene3D - 785 832 - -
Seca1g04840 1515 Gene3D - 833 882 - -
Seca1g04840 1515 ProSiteProfiles Dilute domain profile. 1156 1461 IPR002710 -
Seca1g04840 1515 SMART DIL_2 1336 1443 IPR002710 -
Seca1g04840 1515 FunFam unconventional myosin-Va 834 881 - -
Seca1g04840 1515 FunFam Myosin XI D 735 784 - -
Seca1g04840 1515 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca1g04840 1515 Pfam DIL domain 1337 1439 IPR002710 -
Seca1g04840 1515 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca1g04840 1515 Gene3D - 252 310 - -
Seca1g04840 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 785 IPR027417 -
Seca1g04840 1515 FunFam Class V myosin 439 581 - -
Seca1g04840 1515 PANTHER MYOSIN 830 1449 - -
Seca1g04840 1515 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca1g04840 1515 Gene3D - 666 733 - -
Seca1g04840 1515 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca1g04840 1515 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca1g04840 1515 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca1g04840 1515 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca1g04840 1515 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca1g04840 1515 Gene3D Kinesin motor domain 65 662 IPR036961 -
Seca1g04840 1515 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Seca1g04840 1515 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca1g04840 1515 SMART iq_5 782 804 IPR000048 GO:0005515
Seca1g04840 1515 SMART iq_5 830 852 IPR000048 GO:0005515
Seca1g04840 1515 SMART iq_5 853 875 IPR000048 GO:0005515
Seca1g04840 1515 SMART iq_5 805 827 IPR000048 GO:0005515
Seca1g04840 1515 SMART iq_5 734 756 IPR000048 GO:0005515
Seca1g04840 1515 SMART iq_5 757 779 IPR000048 GO:0005515
Seca1g04840 1515 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Seca1g04840 1515 Pfam IQ calmodulin-binding motif 786 804 IPR000048 GO:0005515
Seca1g04840 1515 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Seca1g04840 1515 Pfam IQ calmodulin-binding motif 832 851 IPR000048 GO:0005515
Seca1g04840 1515 Pfam IQ calmodulin-binding motif 761 778 IPR000048 GO:0005515
Seca1g04840 1515 FunFam unconventional myosin-Va 785 833 - -
Seca1g04840 1515 Coils Coil 877 950 - -
Seca1g04840 1515 FunFam Myosin 2 312 430 - -
Seca1g04840 1515 Gene3D - 439 623 - -
Seca1g04840 1515 CDD MyosinXI_CBD 1107 1484 IPR037975 GO:0007015
Seca1g04840 1515 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Seca1g04840 1515 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Seca1g04840 1515 Coils Coil 972 1048 - -
Seca1g04840 1515 FunFam Myosin heavy chain 252 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04840 Seca-Chr1 150808446 150830374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04840 1 1514 Myosins gene family AT5G43900 74.457 0.0 2343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04840 K10357 - gmx:100819463 2749.54