Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04837 ATGATCGCCGGTGGCTGCTTTGCCGGAATTCCGCGAGCTGCGGCGGCGAGGTTCCTCAGCTCGAACCTGCTTCCTTCTGACGATGCTTTTGGCTTGTTTTCTGTTCGGCGAGAGAGAATGCCGGTGTCGGTTATCTTCCTCCTTGCTCTTCTTAACTTGCTTTTCTCTTGCCAAGGTTTTTTGCATGCAGTGAAGTCATTTTCTCTGAGTGTGTCATTTACTTCATCGGAACGAGCTAAAACGTGGTTAGTTAAACCTTCTTCTGGACCATCTTATGCACCTGCTCCATCTCCATCTTATCGAGGACCCAGTGTGATTCCAAGACCAAAACACCACCGTCATCACCATCGTCATCATAGCAGGAGACCTTATGTAGTGGCTCCACCCCCTTCTAAAGACCAAGCTTGTGACCAAATCTGTACGGAACCACTCACATCAACTCCCTTTGGTTCACCTTGTGGTTGTGTATTTCCTATGAAAGTCAGACTTGCACTGGATGTAGCTCCTTATGCTGTTTTTCCAGTAATGACTGAGTTAGAGAATGAAATTGCATTAGGCACATATTTGGAGCAGAGTCAGGTGAAAATAATGGGTGCCAGTGCTGACAGTCAAAATCAGGGAAGAACTATTGTTGATATTAACTTGGTTCCACTAGGAGAGAAATTTGACAATACAACTGCTGCTCTGACATATGAGAGGTTTTGGCACAAGAAAGTTCCTCTAAATAGGAGCCTGTTTGGTGATTATGCTGTTGTGTACATTACATATCCAGGAATGCCATCATCGCCACCGGATGGAACTTTTATCGGGAGTGGTCCCAGTGAAAATGCTGATGGTATACTGCCAGTCAGTGCCAACTTTGCCAACAAGAACCAGAAAACGAATCTTAGAACCATAATCATCGTTGCTTTATCTTCCTTTGTGCTCTTGCTGGTCTTGGTTGGAGCATTTTCCATCACTTTGAAATGGAGGAAGACTAGGAGATCATCGAGTGCTGTTGGCCCTGCATTCACATCTTCTCTAAACAAGAGATCTGGCTTGGGGTCTATGTTGTCAAGCAGTATTACAAGCTCGACATCAATGTCCCTCATGTCCACAATGGCTACTTCCATTCTCTCTGTTAAAACATTTTCACTTTCTGAGCTTGAGAAAGCAACGGACAAGTTTAATTCAAAGAGAGTATTAGGAGAAGGAGGATTTGGACGTGTTTATAGTGGGACATTGGAGGATGGGACTGAAGTTGCAGTTAAGCTGCTAACAAGGGATAATCAGAATGGAGACCGTGAATTTATTGCAGAAGTTGAGATGCTAAGCCGTTTGCATCATCGAAATTTAGTGAAACTTATTGGTATATGCATTGAAGGCCGCAGGCGTTGCTTGGTGTATGAGCTTGTTCCCAATGGCAGTGTTGAGTCCCATCTGCATGGTGAGGACAAGAAAAAGGGTCCTCTAGATTGGGAAGCACGTATGAAAATTGCCCTTGGAGCTGCAAGAGGATTGGCCTATCTTCATGAGGATTCTAATCCTCGTGTAATTCATCGAGACTTTAAAGCTAGCAATGTGTTACTAGAAGATGACTTCACCCCGAAAGTTTCTGATTTTGGCTTGGCAAGAGAAGCAACTGAAGGGAGTAGTCATATCTCTACACGGGTGATGGGGACTTTTGGGTATGTTGCCCCAGAATATGCTATGACAGGCCATTTACTGGTTAAAAGTGATGTTTATAGTTATGGAGTTGTGCTGCTTGAACTTCTCACAGGCAGAAAGCCAGTAGATATGTCTCAACCTCAGGGACAGGAGAATCTGGTAACTTGGGCACGGCCACTGTTGACTAGTAGAGAAGGTTTAGAACAGCTAGTAGATCCATCTTTGGCTGGAAGTTACAACTTTGATGACATGGCAAAGGTTGCTGCTATTGCTTCAATGTGTGTTCACCCGGAGGTCACACAGAGACCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATATACAATGACACAGATGAGACTTGTGGAGATTATTGTAGTCAGAAGGACTCCTCTACTCAGGAGTCAGACTTTAGAGGCGACCTTGCCCCTTCTGATAGCAGTTGGTGGAATGCTGGAGGGTTAACCCCTCGATTAACTTATGGTCAAGCATCTTCCTTCATCACAATGGAATACAGTTCTGGTCCACTTGAAGAAATGGAAAACAGACCGTTTTCAACTTCAAGCTTGATTGGAGATGAGATATCTTTACCAATTAGGCATGGAAATAGATCAGGTCCCTTAAGAACAGTCCGAAGCAAGCTATCTTTACATAGATTTACAGGGAGCAGGAGTGAGCATGGGGGACTTTCTTCCAAGCGTAATAGGAATGATGGTTACTGGGTTTAA 2379 0.4426 MIAGGCFAGIPRAAAARFLSSNLLPSDDAFGLFSVRRERMPVSVIFLLALLNLLFSCQGFLHAVKSFSLSVSFTSSERAKTWLVKPSSGPSYAPAPSPSYRGPSVIPRPKHHRHHHRHHSRRPYVVAPPPSKDQACDQICTEPLTSTPFGSPCGCVFPMKVRLALDVAPYAVFPVMTELENEIALGTYLEQSQVKIMGASADSQNQGRTIVDINLVPLGEKFDNTTAALTYERFWHKKVPLNRSLFGDYAVVYITYPGMPSSPPDGTFIGSGPSENADGILPVSANFANKNQKTNLRTIIIVALSSFVLLLVLVGAFSITLKWRKTRRSSSAVGPAFTSSLNKRSGLGSMLSSSITSSTSMSLMSTMATSILSVKTFSLSELEKATDKFNSKRVLGEGGFGRVYSGTLEDGTEVAVKLLTRDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVPNGSVESHLHGEDKKKGPLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSSHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARPLLTSREGLEQLVDPSLAGSYNFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCGDYCSQKDSSTQESDFRGDLAPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLIGDEISLPIRHGNRSGPLRTVRSKLSLHRFTGSRSEHGGLSSKRNRNDGYWV. 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04837 792 CDD STKc_IRAK 395 664 - -
Seca1g04837 792 MobiDBLite consensus disorder prediction 106 123 - -
Seca1g04837 792 MobiDBLite consensus disorder prediction 772 792 - -
Seca1g04837 792 ProSiteProfiles Protein kinase domain profile. 389 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04837 792 Gene3D Transferase(Phosphotransferase) domain 1 465 687 - -
Seca1g04837 792 PANTHER OS01G0750732 PROTEIN 128 685 - -
Seca1g04837 792 SUPERFAMILY Protein kinase-like (PK-like) 367 664 IPR011009 -
Seca1g04837 792 Pfam Protein tyrosine and serine/threonine kinase 391 661 IPR001245 GO:0004672|GO:0006468
Seca1g04837 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672|GO:0006468
Seca1g04837 792 MobiDBLite consensus disorder prediction 85 130 - -
Seca1g04837 792 Gene3D Phosphorylase Kinase; domain 1 360 464 - -
Seca1g04837 792 ProSitePatterns Protein kinases ATP-binding region signature. 395 417 IPR017441 GO:0005524
Seca1g04837 792 FunFam Receptor-like serine/threonine-protein kinase ALE2 465 683 - -
Seca1g04837 792 FunFam receptor-like serine/threonine-protein kinase ALE2 362 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04837 Seca-Chr1 150769275 150776010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04837 139 778 Receptor kinase-like Gene Family AT5G56890 56.061 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Seca1g04837 PK_Tyr_Ser-Thr 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04837 - - gmx:100792309 1317.37