Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04835 ATGAAAATTGCAGAAGGTGCAGCAAAAGGACTTGAATATTTACATGAAGTAGCAAACCCACTAGTGATATATCGTGACTTCAAAGCATCAAACATACTGTTAGATGAAAACTTCAATCCAAAGCTTTCTGATTTTGGACTTGCAAAGCTTGGTCCAACTGGGGATAACTCACATGTATCCACCAGAGTGATGGGAACATATGGCTACTGTGCTCCTGAGTATGCATCAACAGGGCAGTTAACTACAAAATCAGATGTGTACAACTTTGGAGTAGTGTTTTTGGAAATGATCACAGGAAGAAGAGTCATTGACAATTCAAGGCCATCAGAACAACAAAATTTAGTCATTTGGGCACAACCACTTTTGAGAGACAGAAGGAAATTTACAATAATGGCAGATCCATTGCTAGAAGATAAATACCCCATAAAGGGTTTATACCAAGCTTTAGTAGTAGCAGCAATGTGTCTCCAAGAAGAAGCTGATACCCGACCTTTGATCAGTGATGTAGTTACAGCTCTTGACTTTTTGGCAAGGAGGAAAGTAGAGGCGGATGAAATGCAACAATCAAAAGAAACTTCTCCTTCTTCTTCTCAGGATGGACATGATAGTGGAGACAATGAATCTAATGCAGTGAATGATGATGATGATGATGACAATGATGATGAAGAAGAAGATGATGATGATGATGAAGATGATGATGAGGATGAAGAAGATACTGATAAAAAAGGATAG 732 0.3852 MKIAEGAAKGLEYLHEVANPLVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDNSHVSTRVMGTYGYCAPEYASTGQLTTKSDVYNFGVVFLEMITGRRVIDNSRPSEQQNLVIWAQPLLRDRRKFTIMADPLLEDKYPIKGLYQALVVAAMCLQEEADTRPLISDVVTALDFLARRKVEADEMQQSKETSPSSSQDGHDSGDNESNAVNDDDDDDNDDEEEDDDDDEDDDEDEEDTDKKG. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04835 243 SUPERFAMILY Protein kinase-like (PK-like) 2 175 IPR011009 -
Seca1g04835 243 ProSiteProfiles Protein kinase domain profile. 1 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04835 243 MobiDBLite consensus disorder prediction 183 243 - -
Seca1g04835 243 ProSitePatterns Serine/Threonine protein kinases active-site signature. 22 34 IPR008271 GO:0004672|GO:0006468
Seca1g04835 243 Pfam Protein kinase domain 3 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04835 243 PANTHER OS07G0668900 PROTEIN 1 187 - -
Seca1g04835 243 MobiDBLite consensus disorder prediction 209 237 - -
Seca1g04835 243 SMART serkin_6 1 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04835 243 MobiDBLite consensus disorder prediction 188 205 - -
Seca1g04835 243 FunFam Serine/threonine-protein kinase PBS1 1 192 - -
Seca1g04835 243 Gene3D Transferase(Phosphotransferase) domain 1 1 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04835 Seca-Chr1 150734908 150735776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04835 1 177 Glycoside Hydrolase AT3G07070 71.186 2.08e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca1g04835 Pkinase 3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04835 - - gmx:100790474 352.443