Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04832 ATGCCACCCAGCTTCGTATTTGAACCCCCCAGCGACGAAGAACTCGAACACTCCGAACCCGAAGAAGAAGAAGACAACGACGAAGAAGAAGTTGAGTCTGAATCAGAATCAGAATCAGACGAAGAGCGCAAAGAAGCGCGAGTTTCGAAGAAGAAAACACAGTCTCCATGGGACTTTGCTAAATACACGGAATCAGTGGCCGAGGAACACGCTCGCCGGAGCACAACCTCGGTGGATGAGAAAATCTCCAAAGCCCTCAAACAACGTTCCACGCCGCTCGTTGCAGTGCCCGACCCAGAAGACGATAGCTCCGAGTCCGAACCCGATAAACAAGAAGATTACAGACCGGAAGAGGAAGATGAAGAAGAGGGTAATGTTGATCACAAGTCCTTTTTTGCTCCTTCTGATGGGGCCTCTTTCCATGCAGATTCCTTCTTGCAGCTCAATTTGTCTCGCCCTTTGCTCCGGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACACCAATTCAGGCTGCTTGTATACCATTAGCATTGACTGGTCGCGATATATGTGGAAGTGCCATTACTGGGTCTGGAAAGACAGCTGCATTTGCACTGCCCACTTTAGAGAGGTTGTTGTTCCGTCCAAAACGTGAGCATGCAATAAGGGTCCTTATTCTTACTCCAACCAGAGAGTTGGCAGTCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTGTCAACGAAGGTTTGA 771 0.489 MPPSFVFEPPSDEELEHSEPEEEEDNDEEEVESESESESDEERKEARVSKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALKQRSTPLVAVPDPEDDSSESEPDKQEDYRPEEEDEEEGNVDHKSFFAPSDGASFHADSFLQLNLSRPLLRACEALGYAKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKREHAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKV. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04832 256 MobiDBLite consensus disorder prediction 100 124 - -
Seca1g04832 256 MobiDBLite consensus disorder prediction 1 133 - -
Seca1g04832 256 Gene3D - 102 256 IPR027417 -
Seca1g04832 256 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 256 IPR014001 -
Seca1g04832 256 MobiDBLite consensus disorder prediction 14 39 - -
Seca1g04832 256 MobiDBLite consensus disorder prediction 63 86 - -
Seca1g04832 256 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 104 255 - -
Seca1g04832 256 MobiDBLite consensus disorder prediction 40 54 - -
Seca1g04832 256 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Seca1g04832 256 Pfam DEAD/DEAH box helicase 167 254 IPR011545 GO:0003676|GO:0005524
Seca1g04832 256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 255 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04832 Seca-Chr1 150695264 150697468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04832 138 256 Eukaryotic Initiation Factors Gene Family AT5G11200 33.333 3.30e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04832 K13181 - gmx:100776684 370.163