Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04831 ATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATTCTATGTCGGTGGATTTGGATGATCTTGCTGTTTTAATCCTTGATGAGGCAGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCACGAACTTGTTCGCATGTGTCCCAAAAAAAGGCAGACTATGCTGTTTTCAGCAACCATGACTGAAGAGGTGGATGAACTTATTAAACTTTCGCTGTCAAAACCCTTACGTCTTTCTGCTGATCCATCTGCAAAACGGCCAGCAACGTTGACCGAGGAGGTGGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCTAAAGTGATCATCTTCAGTGGAACGAAGCAAGCTGCACATAGGTTGAAGATTATATTTGGATTAGCTGGATTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAACGCCTTGAAGCTTTGGAACAGTTCAGGAAGCAGCAAGTGGATTTTTTGGTTGCAACTGATGTGGCTGCTCGTGGACTTGACATTATTGGTGTTCAAACCGTTATCAACTTTGCATGTCCACGCGATCTTACTAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGACGAGAAGGATATGCTGTCACATTTGTTACTGATAATGACCGGTCACTTTTAAAAGCCATTGCAAAAAGGGCTGGTTCAAAGCTGAAAAGCCGCATTGTTGCAGAGCAATCTATACTCAAGTGGTCTCAAATAATTGATCAAATGGAGGATCAAATTGCTGAAATATTTGAAGAAGAGAGGGAAGAAAGAGCCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCACATAAGGAGGAGATATTTTCCCGCCCCAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAGAAGCTTGCTGCAACAGCAGCAAAGGTATCCATGCATAAAGGAACGAGTTCTGGGAAGGAGGTAATTAGTGCCCAAGAAGCTGAAGACCTCAGAATGAAGGAAAAGAGGAAACGGGAGCGGGAGAAACATTTGCCAAGAAAGAAGCGCAGAAAATTGGAAGCAGCTAGAGAGATGTTGGAGGATGAGGACCAGGATGACAAGCCAGTAGAAGCTAAGGGAACAAATAAGAAAGAAAAGGGCGGGATGTCACTTGTTGATCTTGCTTACCGACGGGCAAAAGCAGTGAAGGCTGTCAAGAGGGCTCTAGATTCTGGCAAGATTGTAAGGAAGAGTCAAAAGAAATCTAACAATCCTTCTCTAAAGACTCCTTCAAGGACAGAAGAGATGCGGGAGCTATTCCAGACTGACATGAAGGAGAAAAAGACAAAGAAAAGAGGTATTGGAGCAGGAAAGAAGTCCAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGCAGGTAG 1461 0.4374 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRMCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSAKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSQIIDQMEDQIAEIFEEEREERALRKAEMEATKAENMIAHKEEIFSRPKRTWFVTEKEKKLAATAAKVSMHKGTSSGKEVISAQEAEDLRMKEKRKREREKHLPRKKRRKLEAAREMLEDEDQDDKPVEAKGTNKKEKGGMSLVDLAYRRAKAVKAVKRALDSGKIVRKSQKKSNNPSLKTPSRTEEMRELFQTDMKEKKTKKRGIGAGKKSKSSFKSKSRYKRR. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04831 486 MobiDBLite consensus disorder prediction 420 486 - -
Seca1g04831 486 MobiDBLite consensus disorder prediction 330 405 - -
Seca1g04831 486 Pfam DEAD/DEAH box helicase 2 74 IPR011545 GO:0003676|GO:0005524
Seca1g04831 486 MobiDBLite consensus disorder prediction 464 486 - -
Seca1g04831 486 MobiDBLite consensus disorder prediction 371 399 - -
Seca1g04831 486 Pfam Helicase conserved C-terminal domain 117 220 IPR001650 -
Seca1g04831 486 MobiDBLite consensus disorder prediction 444 463 - -
Seca1g04831 486 SMART helicmild6 135 220 IPR001650 -
Seca1g04831 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 240 IPR027417 -
Seca1g04831 486 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 85 IPR014001 -
Seca1g04831 486 Gene3D - 106 340 IPR027417 -
Seca1g04831 486 Gene3D - 1 92 IPR027417 -
Seca1g04831 486 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 96 259 IPR001650 -
Seca1g04831 486 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 31 39 IPR000629 -
Seca1g04831 486 CDD SF2_C_DEAD 97 229 - -
Seca1g04831 486 Coils Coil 265 305 - -
Seca1g04831 486 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 2 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04831 Seca-Chr1 150688848 150694542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04831 4 237 Eukaryotic Initiation Factors Gene Family AT3G13920 33.755 2.21e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04831 K13181 - gmx:100791233 726.087