Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04814 ATGGCTGCTTTCACTTGCTCCGCCGCCGATCTCCACCCTCTCCTTGGCACCGGTGCTAATGCCACTGCTGCTGCTGAATACATTTGTGGAGGCTTTCAAGCAATTTCAAACAAATTTGTTGATACTTCTTATGCTATTGATAACACCTACCTTCTTTTCTCTGCATACCTTGTTTTTGCTATGCAACTTGGTTTTGCCATGCTTTGTGCTGGTTCTGTCCGTGCCAAAAACACCATGAATATTATGCTTACCAATGTCCTTGATGCTGCCACTGGTGGCATCTTCTTTTACATCTTTGGTTTTGCCTTGGCTTTTGGAACCCCTTCTAATGGTTTCATTGGAAAGCATTTCTTTGGCCTTGACATGTTCCCTTCTCCATCTTTTGACTATGGATTCTTCCTCTATCAATGGGCTTTTGCAATTGCTGCTGCTGGGATTACCAGTGGTTCTATTGCAGAAAGGACACAGTTTGTGGCCTATTTGATTTACTCTTCATTTTTGACTGGTTTGGTGTACCCTGTTGTGGCTCATTGGTTCTGGTCTTCTGATGGTTGGGGTAGTCCTACACGTGTGCAGAATCTTTTGTTTGGATCTGGGGTCATTGATTTTGCTGGCTCTGGTGTTGTTCATTTGGTTGGAGCTATTGCTGGCTTCTGGGGTGCTTTAATTGAAGGCCCTCGTATTGGAAGATTTGATCATGAAGGAAAATCTGTGCCAATGAGAGGACATAGTGGTACTTTGGTTGTTTTGGGTACTTTCTTGTTGTGGTTTGGTTGGTATGGTTTCAATCCTGGCTCATTTTTTAACATTTTGAAGACTTATGGTGAAAGTGGTTCTTACTATGGTCAATGGAGTGCTATTGGGAGGACTGCAGTGACCACAACTCTTGCTGGATGTTCAGCAGCACTCACTACTTTGTTTGGAAAACGTTTGCAAACTGGGCATTGGAATGTCACTGATGTTTGCAATGGTTTGCTTGGTGGGTTTGCTGCAATCACATCAGGGTGCTCTGTTGTGGATCCATGGGCTGCAATTATATGTGGGTTTGTGGCTGCTTGGGTGCTCATTGGATGCAACATTTTGGCTGAGAAATTGAAGTATGATGACCCTCTTGAGGCTGCACAACTTCATGGTGGTTGTGGCACTTGGGGGATCATTTTCACTGCATTGTTTGCTAAGAAACAGTATGTGAATGAGGTATTCCCAGGGTACCCTGATAGGCCTTATGGACTCTTCATGGGAGGGGGTGGAAGGCTCTTAGCAGCACATTTTATGCAGATTTTGGCTATCACAGCTTGGGTGAGTGTCACCATGGGAAGTATGTTCTTTGTGCTGCACAAACTCAAACTTCTGAGGACATCACCTGAAGAGGAGATGGCTGGCTTGGACTTAACTAGCCATGGTGGATTGGCATATGAGTATCATGAAGAGATTGAACATTCCAAGAAACGTTCTTTGGAAATAACTGTTTGA 1473 0.442 MAAFTCSAADLHPLLGTGANATAAAEYICGGFQAISNKFVDTSYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFFYIFGFALAFGTPSNGFIGKHFFGLDMFPSPSFDYGFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPVVAHWFWSSDGWGSPTRVQNLLFGSGVIDFAGSGVVHLVGAIAGFWGALIEGPRIGRFDHEGKSVPMRGHSGTLVVLGTFLLWFGWYGFNPGSFFNILKTYGESGSYYGQWSAIGRTAVTTTLAGCSAALTTLFGKRLQTGHWNVTDVCNGLLGGFAAITSGCSVVDPWAAIICGFVAAWVLIGCNILAEKLKYDDPLEAAQLHGGCGTWGIIFTALFAKKQYVNEVFPGYPDRPYGLFMGGGGRLLAAHFMQILAITAWVSVTMGSMFFVLHKLKLLRTSPEEEMAGLDLTSHGGLAYEYHEEIEHSKKRSLEITV. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04814 490 Gene3D Ammonium transporter AmtB like domains 28 489 IPR029020 -
Seca1g04814 490 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Seca1g04814 490 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Seca1g04814 490 PANTHER AMMONIUM TRANSPORTER 27 475 - -
Seca1g04814 490 NCBIfam ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca1g04814 490 SUPERFAMILY Ammonium transporter 45 452 - -
Seca1g04814 490 FunFam Ammonium transporter 28 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04814 Seca-Chr1 150538622 150540094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04814 5 487 Inorganic Solute Cotransporters AT4G13510 75.000 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04814 K03320 - cave:132166278 857.825