Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04813 ATGGAAGCTCAAAACTCAGACACCCAATTAACAGCAATTGTTGTAGATGATGATAAGTTGGTCCGAATGATTCATCAAGGGCTGTTAAACAGATTTGGAGTGAAAAGTCACGCTGTGAAAAATGGCAAAGAAGCAGTAGACATTCATTGCCAAGGTCAAAGTTTTGACCTAATTCTCATGCATAGAGAAATGCCAATCATGAATGGAATCGATGTATGTCAACAACAGTGA 231 0.3853 MEAQNSDTQLTAIVVDDDKLVRMIHQGLLNRFGVKSHAVKNGKEAVDIHCQGQSFDLILMHREMPIMNGIDVCQQQ. 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04813 76 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 75 - -
Seca1g04813 76 Pfam Response regulator receiver domain 13 75 IPR001789 GO:0000160
Seca1g04813 76 Gene3D - 1 76 - -
Seca1g04813 76 SUPERFAMILY CheY-like 10 75 IPR011006 -
Seca1g04813 76 ProSiteProfiles Response regulatory domain profile. 11 76 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04813 Seca-Chr1 150536370 150536600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04813 10 75 Response Regulator Gene Family AT3G04280 41.791 5.99e-13 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca1g04813 Response_reg 1.7e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04813 - - cam:101506170 96.6709