Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04808 ATGGCCATCAATGGAATCTCTTCTTCTTCTTCTTCAGGATCGTTGAATACCCTTTTGAATGCGATCCTTGGATTGCCCTTGTTGGAACTTGTGGCAATAATTGCCAACTTGACTCTTCTTCTTCTGTTTCTCATTATTGTTTTGGCGAGGAACATATTCCAAAGAGTTCGATTCGGTAAGGATAATACGGTTGATAATGCTGGCTCAATTCGTGCTAGTGTGGATGGAGAAACAGGTGATGTTCGAATCGGGACATGGTTCAAGTTGTCACTGTTGTCTTGTTTCTATGTTCTGTTGGTGGAAGCTTTGGTTTTGGGATTTGATGGGGCTACTTTGATTAAGGAAGGGGCTAAGGGGAAGCCTGCGGATTTGTCTGTTCTTTCTTTGCCGCTTGTGCAGGGTTTAGCTTGGATTGTGTTAAGCTTGTTGGTTTTGCAATGCAAATCCAAGGGGTCTGAGAAGTTTCCAGTTTTGTTGAGAGTTTGGTGGTTTGTGTTGTTTGTTGTTTGTTTGTGTACTTTATATGTTGATGGGAGAGGGTTTTGGATGGAAGGTTCCAAATACCTGTGTTCTCATGTTGTGGGAAATTTTGCTGCCACCCCTGCTCTTGCCTTCTTGTGTATTGTTGCAATTAGGGGTGTTAGTGGAATACAAGTTTGTAGAAACTCTGAGGTTCACCAGCCTTTGCTTAGTGAAGAAGAAGATCCGGGGTGTCTCAAGGTTACTCCTTATAGTGATGCTGGACTTTTTAGCTTGGTTACTCTGTCTTGGCTGAACCCTCTTCTTTCCATTGGTGCAAAAAGACCACTTGAGCTTAAGGATATTCCCCTTGTTGCACCGAAAGATCGAGCCAAGACTAATTATAAGGTTTTGAATTCTAATTGGGAGAGAATGAAGGCTGAAGACCCATCTAGGCAGGCTTCATTAGCTTGGGCACTTCTTAAGTCATTCTGGAAAGAGGCAGCTTGGAATGCCATCTTTGCTGGCATCACTACTCTTGTCTCATATGTAGGTCCTTACATGATTAGTGACTTTGTTGATTACTTGGGTGGTAAAGAGTCTTACCCTCATGAGGGGTATGTCCTTGCAGGGATATTTTTTGTGGCAAAGCTTGTGGAGACCTTGACAACTAGGCAGTGGTATCTAGGAGTGGACATCTTGGGTATGCATGTTAGGTCTGCTTTAACAGCAATGGTATATCGAAAGGGGCTCAGGCTATCAAGCTTGGCCAAACAAAGTCACACAAGTGGCGAGATTGTTAACTACATGGCAGTTGATGTTCAGAGGGTAGGGGATTACTCCTGGTATCTTCATGACATGTGGATGCTTCCTCTACAGATTGTTCTTGCCCTTGCAATTTTGTATAAGAATGTTGGAATTGCTTCTATTGCGACATTGATTGCTACAATCATTTCCATTGTTGTCACTGTTCCTGTGGCTAGGATCCAAGAAGATTATCAAGACAAATTAATGACTGCTAAGGATGAAAGGATGAGAAAAACATCTGAGTGCTTGAGGAATATGAGGATTCTCAAGCTGCAAGCTTGGGAGGATAGATATCGAATAAAATTGGAGGAAATGCGTGGAGTGGAGTTCAAGTGGCTTCGGAAAGCCCTCTATTCTCAGGCTTTTATAACTTTCATATTCTGGAGTTCCCCTATATTTGTTTCAGCGGTTACTTTTGCTACTTCCATATTGTTGGGTGGTGAGCTGACTGCAGGTGGTGTGCTTTCTGCTCTAGCTACTTTCAGGATCCTCCAAGAACCTTTGAGGAATTTTCCGGACTTGGTATCAACAATGGCTCAGACAAAAGTTTCTCTTGATCGAATATCTGGTTTCCTGCTGGAGGAAGAATTGCAGGAAGATGCAACTATCACCTTGCCACAAGGCATTTCTAACATTGCTATAGAAATTAAGGATGGTGTCTTCTGTTGGGACCCTTCTTCATCTTCTAGGCCTACTCTATCAGGGATAAATATGAAAGTAGAAAGAGGGATGCGTGTAGCTGTTTGTGGTATGGTTGGTTCAGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCTAAGCTTTCTGGTGAAGTTAGAGTGTGTGGCTCTGTTGCATATGTCTCGCAATCAGCATGGATTCAATCAGGAAATATAGAAGAAAATATCCTCTTCGGAAGCCCAATGGACAAAGCAAAGTACAAGAATGTACTTCATGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACATGGAGATCAGACAATTATTGGGGATAGAGGTATAAACTTGAGTGGTGGCCAGAAGCAGCGTGTTCAGCTAGCCCGGGCGCTCTACCAAGATGCTGATATTTATATCCTTGATGATCCCTTCAGTGCAGTTGATGCCCACACTGGATCTGAATTGTTTAGGGAGTATATATTGACCGCGCTAGCAGATAAAACAGTTGTTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATTTGATACTGGTTCTCAAAGAAGGCTGCATCATACAGGCAGGAAAGTATGATGATCTTTTACAAGCAGGAACAGATTTTAAAACTCTAGTTTCAGCTCACCATGAAGCCATAGAGGCTATGGATATCCCTACTCACTCCTCTGAAGATTCAGACGAAAATTTATCATTGGAAGCATCTGTGATGACCAGTAAGAAATTCATTTGTTCTGCGAATGATATTGACAATTTGGCAAAGGAAGTGCAAGAGGGATCATCAGCTCCAGATCAAAAAACAATTAAGGAGAAGAAGAAGAAAGCAAAACGTTCGAGAAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTTAGAGGTAGAGTCAGCATGAAGGTGTATCTTTCATACATGGCAGCAGCATATAAAGGTTTATTGATTCCACTCATAATCATTGCACAAGCATTATTTCAGTTCCTTCAGATTGCCAGTAATTGGTGGATGGCTTGGGCTAACCCTCAAACAGAAGGAGACCAGCCTAAAGTAACTCCCACAAATCTTCTTCTTGTTTACATGGCCCTTGCTTTTGGCAGCTCATGGTTTATATTTGTAAGGGCTGTTCTGGTGGCTACATTTGGTCTTGCAGCTGCACAGAAGCTATTTGTGAAGATGCTTAATAGTGTTTTCCATGCACCAATGTCTTTCTTTGATTCTACACCAGCCGGAAGGATCTTGAATCGGGTATCAGTTGATCAAAGTGTTGTGGATCTTGACATTCCATTTAGACTTGGTGGGTTTGCTTCAACAACAATACAGCTTATTGGTATTGTTGGTGTAATGACAGACGTTACCTGGCAAGTTTTGCTCTTAGTCATCCCAATGGCCATTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTCCGAATTGTAAGCATCCAGAAGTCACCAATTATACATCTTTTTGGTGAATCAATTGCTGGAGCGTCCACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGCGGAACCTCTATCTTCTTGATTGTTTTGCACGGCCGTTCTTCTGCAGTCTTGCTGCAATTGAGTGGCTCTGCCTGCGCATGGAGTTACTGTCAACCTTTGTATTTGCTTTCTGCATGGTATTACTTGTGAGCTTTCCCCATGGAAGTATTGACCCCAGCATGGCTGGACTTGCTGTGACGTATGGCCTGAATTTAAATGCACGCCTATCACGGTGGATACTTAGCTTTTGCAAACTTGAAAATAAAATCATATCTATTGAAAGAATATATCAGTACAGCCAAATTCCCAGCGAAGCACCAGCAATTATTGAAGATTCTCGCCCTCCATCCTCATGGCCTGAAAATGGGACAATTGAAATAATTGATTTGAAGGTCCGTTACAAGGAGAATCTTCCTTTGGTGCTTCATGGAGTATCCTGCTTTTTCCCTGGTGGGAAGAAGATAGGAATAGTTGGACGTACTGGCAGTGGCAAATCTACTTTGATTCAAGCTTTATTTCGGTTGATTGAACCAGAAAGTGGAAGTATCCTTATAGACAACATTAATATTTCAGAGATTGGTCTTCATGACCTTCGAAGCCATCTCAGTATCATACCACAAGATCCAACCTTATTTGAAGGGACAATTCGAGGCAATCTTGATCCTCTTGAGGAGCACCCAGATAAAGAGATTTGGGAGGCACTAGATAAGTCCCAGCTTGGAGAGATTATCCGTGAGAAAGGACAAAAGCTTGATACACCAGTTCTAGAAAATGGAGATAATTGGAGTGTAGGACAGCGACAACTTGTTTCTTTGGGCCGAGCTCTACTGAAGCAGTCAAAAATACTTGTACTTGATGAAGCAACAGCATCAGTTGATACTGCCACTGATAATCTTATCCAGAAGATTATTCGAAAAGAGTTCGAAGACTGCACTGTCTGCACCATTGCACATCGAATTCCTACTGTCATTGACAGTGATCTAGTTCTGGTGCTCAGTGATGGTCGAGTTGCAGAGTTTGACACTCCTTCAAGACTATTAGAGGACAAGTCATCCATGTTTCTGAAGCTGGTGACTGAGTATTCATCACGGTCAAGTGGTATACCAGATTTTTAG 4590 0.4224 MAINGISSSSSSGSLNTLLNAILGLPLLELVAIIANLTLLLLFLIIVLARNIFQRVRFGKDNTVDNAGSIRASVDGETGDVRIGTWFKLSLLSCFYVLLVEALVLGFDGATLIKEGAKGKPADLSVLSLPLVQGLAWIVLSLLVLQCKSKGSEKFPVLLRVWWFVLFVVCLCTLYVDGRGFWMEGSKYLCSHVVGNFAATPALAFLCIVAIRGVSGIQVCRNSEVHQPLLSEEEDPGCLKVTPYSDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLVAPKDRAKTNYKVLNSNWERMKAEDPSRQASLAWALLKSFWKEAAWNAIFAGITTLVSYVGPYMISDFVDYLGGKESYPHEGYVLAGIFFVAKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPLQIVLALAILYKNVGIASIATLIATIISIVVTVPVARIQEDYQDKLMTAKDERMRKTSECLRNMRILKLQAWEDRYRIKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFATSILLGGELTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISGFLLEEELQEDATITLPQGISNIAIEIKDGVFCWDPSSSSRPTLSGINMKVERGMRVAVCGMVGSGKSSFLSCILGEIPKLSGEVRVCGSVAYVSQSAWIQSGNIEENILFGSPMDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYILDDPFSAVDAHTGSELFREYILTALADKTVVFVTHQVEFLPAADLILVLKEGCIIQAGKYDDLLQAGTDFKTLVSAHHEAIEAMDIPTHSSEDSDENLSLEASVMTSKKFICSANDIDNLAKEVQEGSSAPDQKTIKEKKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGLLIPLIIIAQALFQFLQIASNWWMAWANPQTEGDQPKVTPTNLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLNSVFHAPMSFFDSTPAGRILNRVSVDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTDVTWQVLLLVIPMAIACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAIIEDSRPPSSWPENGTIEIIDLKVRYKENLPLVLHGVSCFFPGGKKIGIVGRTGSGKSTLIQALFRLIEPESGSILIDNINISEIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHPDKEIWEALDKSQLGEIIREKGQKLDTPVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRKEFEDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPSRLLEDKSSMFLKLVTEYSSRSSGIPDF. 1530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04808 1529 SUPERFAMILY ABC transporter transmembrane region 310 616 IPR036640 GO:0005524|GO:0016020
Seca1g04808 1529 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 636 860 IPR003439 GO:0005524
Seca1g04808 1529 SUPERFAMILY ABC transporter transmembrane region 963 1263 IPR036640 GO:0005524|GO:0016020
Seca1g04808 1529 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 325 602 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g04808 1529 CDD ABCC_MRP_domain2 1281 1501 - -
Seca1g04808 1529 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 244 1520 - -
Seca1g04808 1529 FunFam ABC transporter C family member 5 621 869 - -
Seca1g04808 1529 CDD ABC_6TM_ABCC_D1 323 610 IPR044746 GO:0140359
Seca1g04808 1529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1274 1513 IPR027417 -
Seca1g04808 1529 Gene3D - 631 865 IPR027417 -
Seca1g04808 1529 SMART AAA_5 664 845 IPR003593 GO:0016887
Seca1g04808 1529 SMART AAA_5 1309 1494 IPR003593 GO:0016887
Seca1g04808 1529 FunFam ABC transporter C family member 10 305 618 - -
Seca1g04808 1529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 859 IPR027417 -
Seca1g04808 1529 ProSitePatterns ABC transporters family signature. 762 776 IPR017871 GO:0005524|GO:0016887
Seca1g04808 1529 FunFam ABC transporter C family member 3 1266 1518 - -
Seca1g04808 1529 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 966 1236 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g04808 1529 Pfam ABC transporter 655 789 IPR003439 GO:0005524
Seca1g04808 1529 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1283 1517 IPR003439 GO:0005524
Seca1g04808 1529 FunFam ABC transporter C family member 5 927 1264 - -
Seca1g04808 1529 CDD ABCC_MRP_domain1 636 836 - -
Seca1g04808 1529 Pfam ABC transporter 1300 1448 IPR003439 GO:0005524
Seca1g04808 1529 CDD ABC_6TM_ABCC_D2 964 1258 IPR044726 GO:0140359
Seca1g04808 1529 Gene3D ABC transporter type 1, transmembrane domain 290 619 IPR036640 GO:0005524|GO:0016020
Seca1g04808 1529 Gene3D ABC transporter type 1, transmembrane domain 925 1264 IPR036640 GO:0005524|GO:0016020
Seca1g04808 1529 Pfam ABC transporter transmembrane region 326 590 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g04808 1529 Pfam ABC transporter transmembrane region 966 1208 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g04808 1529 MobiDBLite consensus disorder prediction 908 935 - -
Seca1g04808 1529 Gene3D - 1266 1519 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04808 Seca-Chr1 150457675 150466538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04808 646 853 Calmodulin-binding Proteins AT2G36910 30.396 2.08e-19 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04808 - - gmx:100790550 2624.74