Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04804 ATGAAGAAGAACAAGATACCAATGAAAAACCAGTTTTTCATCTTCTTCTTCTGTTGTATTGGTTGTTTCTATTATGGTTATGCTGCTGCTGCAAATGATGAAGTATCAGCTTTGCTTTCTATAAAAGCAGGTCTCATTGATCCGTTGAACACACTGAAGGATTGGAGAAATGATGCAGCTCATTGTAACTGGACTGGAGTCACATGCAATTCAGCTGGAGCTGTGGAGAAGCTTGATCTCTCACACAAGAATCTCAGTGGCAGAGTATCCAATGATATACAAAGACTTAAAAGTCTTACTTCTTTCAACTTGTGTTGCAATGCATTTTCATCAACATTGCCAAAATCTATAGTCAATCTCACTACACTGAACAGTCTTGATGTAAGCCAGAATTTCTTCATTGGTGACTTTCCCTTAGGCCTTGGAAGAGCATGGAGACTTATGACCATGAATGCTTCCAGCAATGAGTTCTCAGGTTCACTTCCTGGGGACCTTGGAAATGCCACTTCCTTAGAGATGCTGGACCTCAGAGGCAGCTTCTTTGAAGGGTCAGTTCCTAGATCATTCAGTAACTTGCATAAGTTGAAGTTCCTTGGTCTATCTGGGAATAATCTCACTGGGAAAATTCCTGGAGAGCTGGGACAGCTTTCATCACTGGAGAGTATGATCCTTGGGTATAATGAATTTGAAGGTGGGATTCCAGCTGAGTTTGGAAATCTCACTAGTCTTAAGTATCTTGATTTAGCAGTAGCCAATCTTGGTGGTGAGCTTCCAGCTGAATTGGGAAACCTCAAGTTATTGGATACAGTTTTCTTATACAACAACAATTTTGAAGGCAGAATTCCACCAGCAATTGGCAACATGACTTCTTTGCAGTTGCTGGATCTTTCTGATAACATGTTGTCAGGAAAAATTCCAGCTGAAATAAGTCAGCTGAAGAATTTAAAGCTTTTGAACTTCATGGGAAACCAGCTATCTGGTCCTGTGCCTTCTGGCCTTGGGGATTTGCCTCAACTGGAAGTGCTTGAGCTATGGAATAATTCCTTGTCAGGGCCATTGCCTAGTAACCTTGGCAAGAATTCACCTTTGCAATGGTTGGATGTATCATCCAATTCATTCTCTGGAGAGATTCCAGAAACTCTTTGCAGCCAGGGCAATCTCACCAAGCTTATACTTTTCAACAATGCCTTCTCAGGTCCAATTCCATCAAGCCTATCAATGTGTCCTTCTCTTGTTCGTGTTCGAATTCAAAACAATTTTCTTTCTGGGACAGTTCCTGTGGGTCTTGGCAAGCTTGGGAAGCTTCAGAGGTTAGAATTGGCTAACAATAGTCTGTCTGGTGGAATTCCAGATGACATTACTTCTTCCACATCCCTTTCTTTCATTGATCTCTCAAGAAACAAACTCCATTCTTCTCTTCCTTCCACCATTCTTTCCATTCCAAACCTGCAAGCCTTCATGGTCTCCAACAACAACTTGGAAGGTGAAATCCCAGACCAATTTCAGGACTGTCCCTCACTTACTGTTCTTGATCTCTCATCAAATCATTTATCTGGAAGCATTCCAGCAAGCATTGCTTCATGTGAGAAATTGGTAAACTTGAACCTACAAAATAACCAGTTGACTGGTGAAATCCCAAAAGCATTAGCTAACATGCCTACATTAGCCATGCTTGACCTTTCCAACAATTCTCTTACTGGTCATATTCCTGAAAGCTTTGGTGTTTCTCCAGCTCTGGAAGCATTCAATGTCTCATACAATAAGCTTGAAGGTCCTGTCCCAGCAAATGGTATGCTAAGAACTATAAACCCAAATAATCTTGTGGGCAATGCTGGCCTATGTGGTGGTGTCCTCCTTTCATGTGACCAAAACTCTGCATACTCATCAAGGCGTGGAAGCTTACATGCAAAGCACATCATTACAGGATGGATCATTGGAATATCATCAATCCTAGCCATTGGCATTACAATTTTGGTAGCAAGATCTGTATACATAAGGTGGTACACTGATGGATTTTGCTTCCGAGAAAGATTTTATAAGGGTAGCAAAGGGTGGCCTTGGAGATTGATGGCATTTCAGAGGCTTGGTTTTACAAGTACAGACATTCTAGCTTGTATCAAGGAAACAAATGTGATTGGCATGGGAGCTACTGGGGTTGTTTATAAGGCTGATATACCACATTCAAATACAGTTGTGGCAGTGAAAAAGTTGTGGAGATCAGGAACTGATATTGAAGTAGGAAGCAGTGATGACCTTGTTGGAGAGGTCAACGTTTTAGGGAGGCTAAGGCATAGGAACATTGTTAGACTTTTAGGATTTCTCCATAATGACACTGATGTGATGATAGTTTATGAATATATGCACAATGGCAACCTTGGAGATGCCTTGCATGGTAGACAAGCAACAAGACTGCTTGTAGACTGGGTTTCAAGGTATAACATAGCTCTAGGAGTTGCACAAGGACTTGCATATCTTCATCATGATTGTCATCCACCCGTTATCCATCGAGACATCAAATCAAACAATATATTGCTTGATGCAAATCTTGAGGCAAGGATAGCAGATTTTGGCTTAGCCAAGATGATGATCAGGAAGAATGAAACAGTTTCCATGGTTGCTGGATCCTATGGCTACATTGCCCCTGAATATGGATATGCTTTGAAGGTGGATGAAAAGATTGATGTTTACAGTTATGGAGTAGTATTGTTGGAGCTTCTCACAGGAAAGAGGCCATTAGATCCTGACTTTGGAGAGTCTATAGACATAGTAGAGTGGATTAGAAGGAAGATTAGAGACAACAAATCTCTAGAAGCAGCATTAGACCCCAGTGTAGGTAACAGCAGGCATGTTCTAGAAGAGATGCTTTTAGTTCTAAGAATAGCAGTTCTTTGCACTGCCAAGCTCCCTAAAGACAGGCCAACCATGAGGGATGTCATAATGATGCTTGAAGAGGCAAAGCCTAGGAGAAAGAGCAGTGGCAACAATGAAACTGCATCTTCAGCTAACAATAAAGAGATGCCAGTTTTTAGCACATCACCAGTTAATGGCCTTCTGTAG 3057 0.4141 MKKNKIPMKNQFFIFFFCCIGCFYYGYAAAANDEVSALLSIKAGLIDPLNTLKDWRNDAAHCNWTGVTCNSAGAVEKLDLSHKNLSGRVSNDIQRLKSLTSFNLCCNAFSSTLPKSIVNLTTLNSLDVSQNFFIGDFPLGLGRAWRLMTMNASSNEFSGSLPGDLGNATSLEMLDLRGSFFEGSVPRSFSNLHKLKFLGLSGNNLTGKIPGELGQLSSLESMILGYNEFEGGIPAEFGNLTSLKYLDLAVANLGGELPAELGNLKLLDTVFLYNNNFEGRIPPAIGNMTSLQLLDLSDNMLSGKIPAEISQLKNLKLLNFMGNQLSGPVPSGLGDLPQLEVLELWNNSLSGPLPSNLGKNSPLQWLDVSSNSFSGEIPETLCSQGNLTKLILFNNAFSGPIPSSLSMCPSLVRVRIQNNFLSGTVPVGLGKLGKLQRLELANNSLSGGIPDDITSSTSLSFIDLSRNKLHSSLPSTILSIPNLQAFMVSNNNLEGEIPDQFQDCPSLTVLDLSSNHLSGSIPASIASCEKLVNLNLQNNQLTGEIPKALANMPTLAMLDLSNNSLTGHIPESFGVSPALEAFNVSYNKLEGPVPANGMLRTINPNNLVGNAGLCGGVLLSCDQNSAYSSRRGSLHAKHIITGWIIGISSILAIGITILVARSVYIRWYTDGFCFRERFYKGSKGWPWRLMAFQRLGFTSTDILACIKETNVIGMGATGVVYKADIPHSNTVVAVKKLWRSGTDIEVGSSDDLVGEVNVLGRLRHRNIVRLLGFLHNDTDVMIVYEYMHNGNLGDALHGRQATRLLVDWVSRYNIALGVAQGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMIRKNETVSMVAGSYGYIAPEYGYALKVDEKIDVYSYGVVLLELLTGKRPLDPDFGESIDIVEWIRRKIRDNKSLEAALDPSVGNSRHVLEEMLLVLRIAVLCTAKLPKDRPTMRDVIMMLEEAKPRRKSSGNNETASSANNKEMPVFSTSPVNGLL. 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04804 1018 Gene3D Phosphorylase Kinase; domain 1 706 790 - -
Seca1g04804 1018 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 180 280 - -
Seca1g04804 1018 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 365 625 - -
Seca1g04804 1018 MobiDBLite consensus disorder prediction 992 1018 - -
Seca1g04804 1018 SMART LRR_typ_2 288 312 IPR003591 -
Seca1g04804 1018 SMART LRR_typ_2 504 528 IPR003591 -
Seca1g04804 1018 SMART LRR_typ_2 480 503 IPR003591 -
Seca1g04804 1018 SMART LRR_typ_2 336 360 IPR003591 -
Seca1g04804 1018 SMART LRR_typ_2 96 120 IPR003591 -
Seca1g04804 1018 SMART LRR_typ_2 432 456 IPR003591 -
Seca1g04804 1018 SMART LRR_typ_2 192 216 IPR003591 -
Seca1g04804 1018 SMART LRR_typ_2 552 576 IPR003591 -
Seca1g04804 1018 SMART LRR_typ_2 240 264 IPR003591 -
Seca1g04804 1018 Pfam Leucine rich repeat 481 541 IPR001611 GO:0005515
Seca1g04804 1018 PRINTS Leucine-rich repeat signature 552 565 - -
Seca1g04804 1018 PRINTS Leucine-rich repeat signature 507 520 - -
Seca1g04804 1018 ProSiteProfiles Protein kinase domain profile. 706 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04804 1018 Gene3D Ribonuclease Inhibitor 79 332 IPR032675 -
Seca1g04804 1018 Gene3D Ribonuclease Inhibitor 333 629 IPR032675 -
Seca1g04804 1018 Pfam Protein kinase domain 708 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04804 1018 SUPERFAMILY RNI-like 77 398 - -
Seca1g04804 1018 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Seca1g04804 1018 MobiDBLite consensus disorder prediction 983 1018 - -
Seca1g04804 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Seca1g04804 1018 FunFam MDIS1-interacting receptor like kinase 1 791 1001 - -
Seca1g04804 1018 SUPERFAMILY Protein kinase-like (PK-like) 702 983 IPR011009 -
Seca1g04804 1018 Gene3D Transferase(Phosphotransferase) domain 1 791 1008 - -
Seca1g04804 1018 FunFam MDIS1-interacting receptor like kinase 1 706 790 - -
Seca1g04804 1018 SMART serkin_6 706 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04804 1018 SUPERFAMILY RNI-like 305 591 - -
Seca1g04804 1018 Gene3D Ribonuclease Inhibitor 26 78 IPR032675 -
Seca1g04804 1018 PANTHER UNNAMED PRODUCT 18 913 - -
Seca1g04804 1018 FunFam Leucine-rich repeat receptor protein kinase EMS1 281 364 - -
Seca1g04804 1018 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 31 179 - -
Seca1g04804 1018 ProSitePatterns Protein kinases ATP-binding region signature. 712 736 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04804 Seca-Chr1 150427139 150430647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04804 12 1018 Receptor kinase-like Gene Family AT1G08590 59.845 0.0 1180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g04804 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04804 - - gmx:100811284 1784.62