Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04803 ATGCAGCAGGGTGGTGGTGGGTCGAAATCAACAGTGTCTAAAGATGACAACTTGGTCCTCTCCTCTGAGTCTGAGGATTCTTGTTGCCCAGATGAGTCAGAACTCCAATTGGGTCTTTCGTTGACCCTCTCTCCCTATGCCAATTTTCCTTCTTCTTCTTCTTCCTCTTCTGGGACCAAAAGACCAGCTCATTCTGATTCTCATTCTGCTGTCGCCTCTGTTAACGGTCCCAGTCAAGTAGTTGGATGGCCCCCTCTTGGAGCATATAGAATGAACAGCTATAATAGCCATGCAAAATCACCAGCCACTGAAGTATTCAATTCCATGGTTGAAAAAAGTAAGAGCAATAGAGCTGTGGTAAGGAAGAGTGCTGACAATGGCAGTGATAATAACAGCATTATTTCCAAAGAAAATAGAAACCCTAAGGGTTCCCTGTTTGTAAAAGTGAAAACGGATGGGATTCCAATTGGAAGGAAGGTTGATTTAAGTGCTCATAGTTCCTATGAAACGTTAGCCCAAACCTTGGAGGATATGTTTAATGAACCAACTACAGTTCTCACTTGCAAAGATTCCCTTTTCTTCCCTAATGGTATTACAGTTGGAGCAGATGGGCAGTTAAAATTGTTGGATGGATCTTCCAACTTTGTGCTCACATATGAAGACAAGGAAGGAGACTGGATGCTTGTAGGAGATGTTCCCTGGTGGATGTTCCTTAGCTCTGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTGCACCAAGATTGGAAGAAAAGAACAGCAGATTGAAGAGCAATCCTGTGTAG 816 0.435 MQQGGGGSKSTVSKDDNLVLSSESEDSCCPDESELQLGLSLTLSPYANFPSSSSSSSGTKRPAHSDSHSAVASVNGPSQVVGWPPLGAYRMNSYNSHAKSPATEVFNSMVEKSKSNRAVVRKSADNGSDNNSIISKENRNPKGSLFVKVKTDGIPIGRKVDLSAHSSYETLAQTLEDMFNEPTTVLTCKDSLFFPNGITVGADGQLKLLDGSSNFVLTYEDKEGDWMLVGDVPWWMFLSSVRRLRIMRTSEANGLAPRLEEKNSRLKSNPV. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04803 271 MobiDBLite consensus disorder prediction 1 26 - -
Seca1g04803 271 MobiDBLite consensus disorder prediction 48 77 - -
Seca1g04803 271 MobiDBLite consensus disorder prediction 1 33 - -
Seca1g04803 271 MobiDBLite consensus disorder prediction 48 76 - -
Seca1g04803 271 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 33 254 IPR003311 GO:0005634|GO:0006355
Seca1g04803 271 Pfam AUX/IAA family 59 258 IPR033389 -
Seca1g04803 271 SUPERFAMILY CAD & PB1 domains 138 247 - -
Seca1g04803 271 ProSiteProfiles PB1 domain profile. 144 251 IPR000270 GO:0005515
Seca1g04803 271 MobiDBLite consensus disorder prediction 116 138 - -
Seca1g04803 271 Gene3D - 139 261 - -
Seca1g04803 271 FunFam Auxin-responsive protein 139 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04803 Seca-Chr1 150422734 150426444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04803 147 258 B3 DNA Binding Superfamily AT1G59750 30.357 2.23e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Seca1g04803 AUX_IAA 1e-56 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04803 K14484 - gmx:100779400 314.309