Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04796 ATGGCACCAAATCCAAAAGTAGTAGCGGCCTATCGTGCAATGGCAAATCTTGGAATTCATGAATCAAAAGTGAAACCAGTATTAAGGAAACTACTTAAATTGTATGATAAAAATTGGGAACTTATTGAAGAAGAGAATTATAGGGCTCTTGCAGATGCTATATTTGAGGAGGATGAAAACAAGGTGCCGGAGCCAGACCAGAAAATTAAAAGAAAGCAGGGAGGAGAGACAGATGATGAAGAAGCTCATATGCATGATGAGCCATTGCGACCTTTGAAGATGTTGCGTTTAAGAAGCCAAGAGGTTCAATCTTCACGCCTCCTGACTAGTTGTGGCCCCAGCTCTGCTGCCTTTCCATTAAAAACACCTAAATTAGAAGATGGCACAATGCCTCAAAGTAATTCCAGACTGCAGCCTCAAAACACAACAGTGTTACCTGATGGAAATGCAAGGATTGAAGCGCATCAAGTTCCACCACGAGATGTCATTGTTGACAAGGGAAAGCAACCTGTATCACCCCAAGATACTCCCAGAGGGAGAAGATCTATGTATGACAGAACTACTCCTGCAGTTCCATTTAAAGAACCAACAGTCGAACCAGGAGCCTCCCTGTCATCAAAAAACAAAATGCCTCATTCTTACACTTTTATCATGCCTAAGGATGAGCCTGTTGATGATATATTAGATAATGAAGTTCCCCTTGCAGTGATTCATCCTGAACCATCAAGTGGAAGAGACTATTCAATGAAAAATGATTCAGCTGGTCTGCAAGATGGCCATGACACTGTGGCATCACAAGGCAGAGGTGAAGACGGTGAAGGTGAAGATATTCTTCCTTCCTCAAATGAAGAAGTAGCTTCTAATGTAGAGCTAACCCCATCTTCTATGGGAGAGGAAGGACCTGAGGAGATAACACCGACTGTTGATAGTTCAAAGGAGTTTGAGACAAATGACACACTGATTGCCAAAGGAAAAAAAGATTTCATGCGATCCTGCGTTTCAAATGGATCAATCAATATTATGTCTTCTCCTACCCTGGTTGTACCTCAAGTTCATGATTCTTCACCCGGCTGGAGTGGTCTGGATGGTACTGCACAAGGTTCTGAGAAGGCTGGGATGAATGATTTCTTGGAAATGAATGCTCCAAAGCATCAGCCTACAACTGGTGATATAAGGGATATTCGTGATGTTAATGACATAACAAAGGGAGAAGAAAGGGTGAAAGTTTCATGGGTGAATAACAGTACTAATGATTCCCCAACATCCTTTCACTACATACCACGAAACCTTGTGTTCAAAGATGCATATGTTAATTTTTCACTATCTCAAATCAGGAATGAGGATTGTTGTTCTACCTGTATGGGCAATTGTGTCTTGTCATCTAAACCATGTTCGTGCTCAAATAAAACTGGGGGTGAATTTGCTTACACTGCACAAGGCCTGCTAAAGGAAGAGTTCTTGGATGAGTGTATTGCCATCATTCGGGACCCTCAAAATTATTTTTACTGCAAAGACTGCCCGCTTGAAAGATCAAAGAGTGATGATTGTTTAGAACCATGTAAAGGACACTTGAAGAGGAAGTTTATTAAAGAGTGCTGGAGTAAATGTGGTTGTGGTAAACAATGTGGTAATCGGGTTGTGCAGCGTGGAATTACTTGCAACTTGCAGGTGTTTTTAACTTCAGACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGTGCATTTATTTGTGAGTTTGTTGGAGAAATTTTGACTGTCAAAGAGTTGCATGAGAGGAACTTGAAATATCCCAAAAATGGGAAATTTACATACCCAATTTTATTGGATGCCGATTGGGGTTCTAGAGCAGTGAAGGATAATGAAGCTCTTTGCTTATATGCAGCAACATTTGGAAATGCTGCTAGATGTTTAGATGCAAACTTGATTGAGATCCCAGTTGAAGTTGAGGGCCCAACTCATCACTACTATCATTTTGCCTTCTTCACGTCCAGGAAAATAGCAACACATGAAGAGCTCACTTGGGATTATGGCGTCAACTTTGATGATCATGACCAGCTAGTTGAGTTGTTCCGGTGCAGATGTGGCAGTAAATTCTGCAGGAATATGAAGCGATCAAATAGTAAGTTCAACCATCAATTTTTGTGCAATATTTAG 2166 0.4118 MAPNPKVVAAYRAMANLGIHESKVKPVLRKLLKLYDKNWELIEEENYRALADAIFEEDENKVPEPDQKIKRKQGGETDDEEAHMHDEPLRPLKMLRLRSQEVQSSRLLTSCGPSSAAFPLKTPKLEDGTMPQSNSRLQPQNTTVLPDGNARIEAHQVPPRDVIVDKGKQPVSPQDTPRGRRSMYDRTTPAVPFKEPTVEPGASLSSKNKMPHSYTFIMPKDEPVDDILDNEVPLAVIHPEPSSGRDYSMKNDSAGLQDGHDTVASQGRGEDGEGEDILPSSNEEVASNVELTPSSMGEEGPEEITPTVDSSKEFETNDTLIAKGKKDFMRSCVSNGSINIMSSPTLVVPQVHDSSPGWSGLDGTAQGSEKAGMNDFLEMNAPKHQPTTGDIRDIRDVNDITKGEERVKVSWVNNSTNDSPTSFHYIPRNLVFKDAYVNFSLSQIRNEDCCSTCMGNCVLSSKPCSCSNKTGGEFAYTAQGLLKEEFLDECIAIIRDPQNYFYCKDCPLERSKSDDCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVVQRGITCNLQVFLTSDGKGWGLRTLEDLPKGAFICEFVGEILTVKELHERNLKYPKNGKFTYPILLDADWGSRAVKDNEALCLYAATFGNAARCLDANLIEIPVEVEGPTHHYYHFAFFTSRKIATHEELTWDYGVNFDDHDQLVELFRCRCGSKFCRNMKRSNSKFNHQFLCNI. 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04796 721 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 712 - -
Seca1g04796 721 MobiDBLite consensus disorder prediction 58 92 - -
Seca1g04796 721 Pfam SET domain 565 681 IPR001214 GO:0005515
Seca1g04796 721 SUPERFAMILY SET domain 394 687 IPR046341 -
Seca1g04796 721 CDD SET_SETDB-like 422 681 - -
Seca1g04796 721 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 719 IPR025776 -
Seca1g04796 721 Gene3D SET domain 400 706 IPR046341 -
Seca1g04796 721 ProSiteProfiles SET domain profile. 553 681 IPR001214 GO:0005515
Seca1g04796 721 ProSiteProfiles Pre-SET domain profile. 449 550 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca1g04796 721 MobiDBLite consensus disorder prediction 105 143 - -
Seca1g04796 721 MobiDBLite consensus disorder prediction 160 210 - -
Seca1g04796 721 Pfam Pre-SET motif 400 545 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca1g04796 721 SMART set_7 553 687 IPR001214 GO:0005515
Seca1g04796 721 Gene3D - 1 60 IPR043017 -
Seca1g04796 721 MobiDBLite consensus disorder prediction 238 315 - -
Seca1g04796 721 SMART preset_2 397 537 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca1g04796 721 MobiDBLite consensus disorder prediction 127 143 - -
Seca1g04796 721 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04796 Seca-Chr1 150318152 150324522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04796 399 704 Su(var)3-9 homologs AT1G73100 28.440 5.75e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca1g04796 Pre-SET 4.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04796 - - gmx:100809678 1021.92