Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04795 ATGGCACCAAATCCAAAAGTATTAGCGGCCTATCGTGCAATGGCAAATCTTGGAATTCATGAATCAAAAGTGAAACCAGTGTTAAAGAAACTACTTAAATTGTATGATAAAAATTGGGAACTTATTGAAGAAGAGAATTATAGGGCTCTTGCAGATGCTATATTTGAGGAGGATGAAAACAAGGTGCCGGAGCCAGACCAGAAAATTAAAAGAAAGCAGGGAGGAGAGACAGATGATGAAGAAGCTCATATGCATGATGAGCCATTGCGACCTTTGAAGAGGTTGCGTTTAAGAAGCCGAGATGTTCAATCTTCACGCCTCCTGACTAGTTGTGGCCCCAGCTCTGCTGCCTTTCCATTGAAAACACCTAAATTAGAAGATGGCACAATGCCTCAAAGTAATTCCAGATTGCAGCCTCAAAGCACAACAGTGTTACCTGATGGAAATGCAAGGATTGAAGCGCATCAAGTTCCACCACGAGTTGTCATTGTTGACAAGGGAAAGCAACCTGTATCACCCGAAGATACTCCCAGAGGGAGAAGATCTATATCTGACAGAACTACTCGTGCAGTGCCATTTAAAGAACCAACAGTCGAACCAGAAGCCTCCCTGTCATCAAAAAACAAAATGCCTCATTCTTACACTTTTATCATGCCTAAGGATGAGCCTGTTGATGATATATTAGATAATGAAGTTCCCCTTGCAGTGATTCATCCTGAACCATCAAGTGGAAGAGACTATTCAATGAAAAATGATTCAGCTGGTCTGCAAGATGGCCATGACACTGTGGCATCACAAGGCAGAGGTGAAGATGGTGAAGGTGAAGATATTCTTCCTTCCTCAAATGAAGAAGTGGCTTCTAATGTAGAGCTAACCCCATCTTGTACGGGCAATTGTGTCTTGTCATCTAAACCATGTTCGTGCTCAAATAAAACCGGGGGTGAATTTGCTTACACTGCACAAGGCCCGCTAAAGGAAGAGTTCTTGGATGAGTGTATTGCCATCATCCGGGACCCTCAAAATTATTTTTATTGCAAAGATTGCCCGCTTGAAAGATCAAAGAGTGATGATTGTTTAGAACCATGTAAAGGACACTTGAAGAGGAAGTTTATTAAAGAGTGCTGGAGTAAATATGGTTGTGACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGTGCATTTATTTGTGAGTTTGTTGGAGAAATTTTGACTGTCAAAGAGTTGCATGAGAGGAACTTGAAATATCGCAAAAATGGGAAATTTACATACCCAATTTTATTGGATGCCGATTGGGGTTCTAGAGCAGTGAAGGATAATAAAGCTCTTTGCTTATATGCAACAACATTTGGAAATACTGCTAGGTTTATTAACCACAGATGTTTAGATGCAAACTTGATTGAGATCCCAGTTGAAGTTGAGGGCCCAACTCATCACTACTATCATTTTGCTTTCTTCACATCCAGGAAAATAGCAGCACATGAAGAGCTCACTTGGGATTATGGCATCAACTTTGATGACCATGACCAGCTAAATGAGTTGTTCCGGTGCAGATCTGGCAGTAAATTCTGCAGGAATATGAAGCGATCAAATAGATCCATTAAATCGTCAACTTTATGA 1629 0.4113 MAPNPKVLAAYRAMANLGIHESKVKPVLKKLLKLYDKNWELIEEENYRALADAIFEEDENKVPEPDQKIKRKQGGETDDEEAHMHDEPLRPLKRLRLRSRDVQSSRLLTSCGPSSAAFPLKTPKLEDGTMPQSNSRLQPQSTTVLPDGNARIEAHQVPPRVVIVDKGKQPVSPEDTPRGRRSISDRTTRAVPFKEPTVEPEASLSSKNKMPHSYTFIMPKDEPVDDILDNEVPLAVIHPEPSSGRDYSMKNDSAGLQDGHDTVASQGRGEDGEGEDILPSSNEEVASNVELTPSCTGNCVLSSKPCSCSNKTGGEFAYTAQGPLKEEFLDECIAIIRDPQNYFYCKDCPLERSKSDDCLEPCKGHLKRKFIKECWSKYGCDGKGWGLRTLEDLPKGAFICEFVGEILTVKELHERNLKYRKNGKFTYPILLDADWGSRAVKDNKALCLYATTFGNTARFINHRCLDANLIEIPVEVEGPTHHYYHFAFFTSRKIAAHEELTWDYGINFDDHDQLNELFRCRSGSKFCRNMKRSNRSIKSSTL. 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04795 542 MobiDBLite consensus disorder prediction 171 188 - -
Seca1g04795 542 ProSiteProfiles SET domain profile. 369 505 IPR001214 GO:0005515
Seca1g04795 542 Pfam SET domain 384 505 IPR001214 GO:0005515
Seca1g04795 542 MobiDBLite consensus disorder prediction 238 279 - -
Seca1g04795 542 SUPERFAMILY SET domain 289 528 IPR046341 -
Seca1g04795 542 SMART set_7 373 511 IPR001214 GO:0005515
Seca1g04795 542 Gene3D SET domain 275 530 IPR046341 -
Seca1g04795 542 Gene3D - 1 60 IPR043017 -
Seca1g04795 542 MobiDBLite consensus disorder prediction 105 143 - -
Seca1g04795 542 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 -
Seca1g04795 542 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 291 539 - -
Seca1g04795 542 MobiDBLite consensus disorder prediction 58 90 - -
Seca1g04795 542 MobiDBLite consensus disorder prediction 167 188 - -
Seca1g04795 542 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04795 Seca-Chr1 150306142 150311106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04795 294 528 Su(var)3-9 homologs AT1G73100 30.556 1.79e-22 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca1g04795 SET 5.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04795 - - psat:127125996 503.442