LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g04795	ATGGCACCAAATCCAAAAGTATTAGCGGCCTATCGTGCAATGGCAAATCTTGGAATTCATGAATCAAAAGTGAAACCAGTGTTAAAGAAACTACTTAAATTGTATGATAAAAATTGGGAACTTATTGAAGAAGAGAATTATAGGGCTCTTGCAGATGCTATATTTGAGGAGGATGAAAACAAGGTGCCGGAGCCAGACCAGAAAATTAAAAGAAAGCAGGGAGGAGAGACAGATGATGAAGAAGCTCATATGCATGATGAGCCATTGCGACCTTTGAAGAGGTTGCGTTTAAGAAGCCGAGATGTTCAATCTTCACGCCTCCTGACTAGTTGTGGCCCCAGCTCTGCTGCCTTTCCATTGAAAACACCTAAATTAGAAGATGGCACAATGCCTCAAAGTAATTCCAGATTGCAGCCTCAAAGCACAACAGTGTTACCTGATGGAAATGCAAGGATTGAAGCGCATCAAGTTCCACCACGAGTTGTCATTGTTGACAAGGGAAAGCAACCTGTATCACCCGAAGATACTCCCAGAGGGAGAAGATCTATATCTGACAGAACTACTCGTGCAGTGCCATTTAAAGAACCAACAGTCGAACCAGAAGCCTCCCTGTCATCAAAAAACAAAATGCCTCATTCTTACACTTTTATCATGCCTAAGGATGAGCCTGTTGATGATATATTAGATAATGAAGTTCCCCTTGCAGTGATTCATCCTGAACCATCAAGTGGAAGAGACTATTCAATGAAAAATGATTCAGCTGGTCTGCAAGATGGCCATGACACTGTGGCATCACAAGGCAGAGGTGAAGATGGTGAAGGTGAAGATATTCTTCCTTCCTCAAATGAAGAAGTGGCTTCTAATGTAGAGCTAACCCCATCTTGTACGGGCAATTGTGTCTTGTCATCTAAACCATGTTCGTGCTCAAATAAAACCGGGGGTGAATTTGCTTACACTGCACAAGGCCCGCTAAAGGAAGAGTTCTTGGATGAGTGTATTGCCATCATCCGGGACCCTCAAAATTATTTTTATTGCAAAGATTGCCCGCTTGAAAGATCAAAGAGTGATGATTGTTTAGAACCATGTAAAGGACACTTGAAGAGGAAGTTTATTAAAGAGTGCTGGAGTAAATATGGTTGTGACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGTGCATTTATTTGTGAGTTTGTTGGAGAAATTTTGACTGTCAAAGAGTTGCATGAGAGGAACTTGAAATATCGCAAAAATGGGAAATTTACATACCCAATTTTATTGGATGCCGATTGGGGTTCTAGAGCAGTGAAGGATAATAAAGCTCTTTGCTTATATGCAACAACATTTGGAAATACTGCTAGGTTTATTAACCACAGATGTTTAGATGCAAACTTGATTGAGATCCCAGTTGAAGTTGAGGGCCCAACTCATCACTACTATCATTTTGCTTTCTTCACATCCAGGAAAATAGCAGCACATGAAGAGCTCACTTGGGATTATGGCATCAACTTTGATGACCATGACCAGCTAAATGAGTTGTTCCGGTGCAGATCTGGCAGTAAATTCTGCAGGAATATGAAGCGATCAAATAGATCCATTAAATCGTCAACTTTATGA	1629	0.4113	MAPNPKVLAAYRAMANLGIHESKVKPVLKKLLKLYDKNWELIEEENYRALADAIFEEDENKVPEPDQKIKRKQGGETDDEEAHMHDEPLRPLKRLRLRSRDVQSSRLLTSCGPSSAAFPLKTPKLEDGTMPQSNSRLQPQSTTVLPDGNARIEAHQVPPRVVIVDKGKQPVSPEDTPRGRRSISDRTTRAVPFKEPTVEPEASLSSKNKMPHSYTFIMPKDEPVDDILDNEVPLAVIHPEPSSGRDYSMKNDSAGLQDGHDTVASQGRGEDGEGEDILPSSNEEVASNVELTPSCTGNCVLSSKPCSCSNKTGGEFAYTAQGPLKEEFLDECIAIIRDPQNYFYCKDCPLERSKSDDCLEPCKGHLKRKFIKECWSKYGCDGKGWGLRTLEDLPKGAFICEFVGEILTVKELHERNLKYRKNGKFTYPILLDADWGSRAVKDNKALCLYATTFGNTARFINHRCLDANLIEIPVEVEGPTHHYYHFAFFTSRKIAAHEELTWDYGINFDDHDQLNELFRCRSGSKFCRNMKRSNRSIKSSTL.	543

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca1g04795	542	MobiDBLite	consensus disorder prediction	171	188	-	-
Seca1g04795	542	ProSiteProfiles	SET domain profile.	369	505	IPR001214	GO:0005515
Seca1g04795	542	Pfam	SET domain	384	505	IPR001214	GO:0005515
Seca1g04795	542	MobiDBLite	consensus disorder prediction	238	279	-	-
Seca1g04795	542	SUPERFAMILY	SET domain	289	528	IPR046341	-
Seca1g04795	542	SMART	set_7	373	511	IPR001214	GO:0005515
Seca1g04795	542	Gene3D	SET domain	275	530	IPR046341	-
Seca1g04795	542	Gene3D	-	1	60	IPR043017	-
Seca1g04795	542	MobiDBLite	consensus disorder prediction	105	143	-	-
Seca1g04795	542	Pfam	Ubiquitin-binding WIYLD domain	6	60	IPR018848	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g04795	Seca-Chr1	150306142	150311106	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g04795	294	528	Su(var)3-9 homologs	AT1G73100	30.556	1.79e-22	99.8

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Seca1g04795		SET	5.5e-17	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g04795	-		-	psat:127125996	503.442

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