Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04794 ATGTCGAAGAGAGGTCGCGGAGGATCGGCGGGGAACAAGTTCAGGATGTCACTGGGTCTGCCAGTGGCAGCGACGGTGAACTGCGCCGACAACACCGGAGCTAAGAACCTTTACATCATTTCGGTGAAAGGGATCAAGGGAAGGCTGAATCGTCTGCCGTCTGCTTGCGTCGGTGACATGGTGATGGCCACCGTCAAGAAGGGAAAGCCTGATCTCCGTAAGAAGGTCTTGCCCGCCGTCATCGTCCGTCAGCGCAAACCTTGGCGCCGAAAGGACGGTGTTTTCATGTACTTTGAAGATAATGCTGGTGTCATTGTGAATCCCAAGGGTGAAATGAAAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTGTGGCCTAGGATTGCAAGTGCAGCCAATGCCATTGTTTAA 423 0.5272 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04794 140 ProSitePatterns Ribosomal protein L14 signature. 79 105 IPR019972 -
Seca1g04794 140 Hamap 50S ribosomal protein L14 [rplN]. 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca1g04794 140 SUPERFAMILY Ribosomal protein L14 11 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca1g04794 140 Gene3D Ribosomal protein L14 1 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca1g04794 140 FunFam 60S ribosomal protein L23 1 140 - -
Seca1g04794 140 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 20 139 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca1g04794 140 SMART Ribosomal_L14_2 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca1g04794 140 Pfam Ribosomal protein L14p/L23e 22 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04794 Seca-Chr1 150273468 150274612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04794 1 140 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 98.571 3.01e-99 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04794 K02894 - fve:101313597 283.878