Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04791 ATGGAAGCACGCCCTGCTTTCTCTATTGAAAGATCAAGTGCAAAGCAACTCAATAACATAGGGATGTCTGGAGCACTTCCTTCATCGTTACCTGTCCTTCCAACGCCTCTAGAAGAGACATACCCCAAATTATCTGATTCACAGCCAGCTTTTGTGGAAAAGGAGTTTAAAACAAGACCCTTGACACATTCAAGTCATTTAATTTCCAGCGGAGCAGTTGGGCATATGTTTTCATCTTCCCCCGGATATTCAACTGATCTTCATCACTCATCCCTTTCACCTCATGAAAAACACTCTAGGAATGCTCATTTTATTTCACAGTCAATGAGTAACATGGCTTCATTGCCATTATCTTATTCTTCAAATAATGGACCAGTATCTTCTACAACATCAACTCATTATTCCAAAGGAAACAGTGCTTCCTGGAATACAGATTCCCTGCCTAGCTTTCTTGATTTCTCTGTGAATACGCCTATTGATAATAGTCAAGTAGAGAGCAGTGCCTGCAATATTATGGCAACTGAGGAGTACTCTAAGCGAAATGATTGGCAGGAGTGGGCCGATCAGCTAATAAGTGATGATGATACTTTGACTTCTAATTGGAATGATCTTCTTGCTGAGAACATTCAAGATCTTGAACCAAAGGTGGGGGATCAGGTTTCAAATTCATCTTCACAATTTCCAGCAGGACACCAATCCCAAGGTCACCAACAACTTCCTACTTCGTCTGGGGAAAATCGTGTTGGTGCTGCCCCATCTTCCTCAGCAAATTCTGCACCTGCCAAGGCACGGATGCGTTGGACACCTGAGCTTCATGAGGCATTTGTGGAAGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCATTTACAGGTATGTACAATTTGCTTTGTCTTCCTATGTTTGTTTCCTTGCATGCTTTTGATGAAACATATTGCTCCATGA 1008 0.4206 MEARPAFSIERSSAKQLNNIGMSGALPSSLPVLPTPLEETYPKLSDSQPAFVEKEFKTRPLTHSSHLISSGAVGHMFSSSPGYSTDLHHSSLSPHEKHSRNAHFISQSMSNMASLPLSYSSNNGPVSSTTSTHYSKGNSASWNTDSLPSFLDFSVNTPIDNSQVESSACNIMATEEYSKRNDWQEWADQLISDDDTLTSNWNDLLAENIQDLEPKVGDQVSNSSSQFPAGHQSQGHQQLPTSSGENRVGAAPSSSANSAPAKARMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQVCTICFVFLCLFPCMLLMKHIAP. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04791 335 MobiDBLite consensus disorder prediction 216 263 - -
Seca1g04791 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 319 IPR017930 -
Seca1g04791 335 NCBIfam myb-like DNA-binding domain, SHAQKYF class 262 313 IPR006447 GO:0003677
Seca1g04791 335 Gene3D - 261 316 - -
Seca1g04791 335 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 236 312 IPR046955 GO:0003700
Seca1g04791 335 MobiDBLite consensus disorder prediction 216 261 - -
Seca1g04791 335 SUPERFAMILY Homeodomain-like 260 314 IPR009057 -
Seca1g04791 335 FunFam Myb family transcription factor 261 317 - -
Seca1g04791 335 Pfam Myb-like DNA-binding domain 264 312 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04791 Seca-Chr1 150253588 150262804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04791 1 312 G2-like Transcription Factor Family AT4G28610 42.500 4.39e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca1g04791 Myb_DNA-binding 1.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04791 - - gmx:100810560 504.212