Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04790 ATGAATTTGAACGAAAAGCAAGGAAAGAGAGGCCTACTAGAGACCAAAGACAAAAGAAAAGATGACCAGATTAAAGATGATGACTATCTTTTGGGTGAAGCTAGGCAACCACTATGGCGCAAAGTGGTAGTACCTTCAAGCCTAATCAACCCATATCGCATAGTCATCATCCTCCGTCTCATAATCCTACTTTTCTTCTTCCAATTTCGTATCACAACACCAGTGCATGACGCATTTGCCTTGTGGCTAATCTCTGTGGTGTGTGAGTTCTGGTTAGCACTGTCTTGGTTTGTTGACCAGTTCCCCAAGTGGTTCCCCATCACTAGAGAAACTTACTTGGACCGTTTGTCTATAAGGTTCGAGCGTGAAGGGGAACCAAGCCTTCTAGCCCCACTTGATGTCTTTGTCACCACCGCTGACCCTTTGAAGGAACCACCCATCATCACTGCAAACACTGTTCTATCAGTGTTATCTGTTGATTACCCTGTTGAGAAGGTCACCTGTTATGTCTCAGATGACAATGCATCTATGCTTCTCTTTGATACACTGGCTGAGACTTCTGAGTTTGCAAGAATATGGGTTCCTTTTTGTAAAAAGTACAATATTGAGCCAAGGGCTCCCGAGTTTTATTTCTCTCAGAAAATTGATTACTTGAAAGATAAGGTGCACCCCACATTTGTAAAGGATCGCAGGGCCATGAAGAGAGAGTATGAAGAATTTAAAGTGAAAATTAATGCATTGGTTGCAAAGGCTCAGAAAAAACCAGAAGAAGGGTGGGTGATGCAGGATGGTAATCCATGGCCTGGGAATGACTCTCATGATCATCCAGGAATGATTAAGGTCTATCTGGGAAGTTCTGGTGCACGGGACAAGGATGGGAAGGAACTACCAAGGCTTGTGTATGTTTCACGGGAAATACGTCCCTGCTATCAACACAACAAAAAAGCTGGTGCCATGAATGCTTTGCTTCGAGTTTCTGCTGTGCTTACCAATGCACCTTTCGTGTTGAATCTGGATTGTGATCATTACACCAATAATAGCAAAGCTATAAGGGAGGCTATGTGCTTTTTAATGGACCCCCAACTTGGGAAGAAGCTTTGTTATGTTCAATTTCCAAAAAGGTTTGATGGTGTTGATCACCATGACAGATATTCCAATCACAATACTATATTCTTTGATATCACCATGAAATGCCTTGATGGGATTCAAGGTCCGGTGTATGTTGGTACTGGATGTGTGTTCAATAGGCATGCATTATATGGCTATGAGCCACCAGTCTCTAAGAAAAGGCCAAAGAAGAGTGGTTGTTGCTGGCCTTTGTGCTGTTGTTGTTCTTGTGGTGGTGACTCTCAACTCACATTTGATCTTGAAGAGATTGATGAAGAATGGCTTGATGGCTATGAGGAGCAAGAGGAATCATCCTTCATGTCCCAAAAAAAATTTGAGAAACGATTTGGACAGTCACCGGTTTTCATTGCTTCCACTTTGATGGAAGGTGGTGGACTTCCTAAAGGCATCAATTCACGATTACTAATTAAGGAAGCCATTCATGTTATAAGTTGTGGTTATGAAGACAAAACTGAATGGGGCAAAGAGATTGGGTGGATTTATGGCTCAGTCACAGAAGATATCTTAACTGGGTTCAAGATGCATTGCAGAGGATGGAAATCAGTGTACTGCATGCCTAAGAGAGCAACTTTTAAAGGGTCTGTTCCAATAAATCTATCAGACCGATTGCACCAAGTTCTGAAATGGGCTCTTGGTTCGGTTGAGATTTTCCTTAGTGGCCATTGTCCATTATGGTATGGATATAGTGGAAAATTGAAGTGGCTGCAAAGACTGGCTTACATTAATATCATTGTTTACCCATTCACTTCCATCCCTCTACTTGTATATTGTGCAATTCCAGTTGTTTGCCTTCTAACTGGAAAGTTCATCATCCCCATTCTGTCAAACCTTGCTAGCATTTGGCTAATGGCTCTATTTATCTCCATAATTTTAGCTTGTGTGCTAGAGCTTAGATGGAGTGGGGTTAGCATTCAGGACCGGTGGCACAATGAGCAATTCTGGGTCATTGGAGGTGTTTCAGCACATCTTTTTGCAGTATTTCAAGGTATCCTCAGAGTTATTGCAGGAGTAGACACTAATTTAAAGGTGAGAGCAAAAGCAGCAGAAGACACTGTATTTGGAGAACTCTATCTCTTCAAGTGGACTACTCTACTTATCCCACCAACCAGTCTAGTAATCTTGAACATGGTGGGAATTGTGGCTGGCATCTCAAATGCCATTAACAATGGCTATGACTCATGGGGACCATTGTTTGGAAAACTATTTTTCTCCTTTTGGGTGATCATGCACTTATACCCTTTCCTTAAAGGTCTAATGGGAAGACAAAACAGGACTCCTACAATAGTAGTCCTCTGGTCAATACTTCTAGCACTAATTTTCTCAATAATTTGGGTTCGCATTGATATCTTCTTGCCCAAGCAAACAGGTCCAGTACTCAAACAGTGTGGATTAGAATGCTAA 2529 0.4187 MNLNEKQGKRGLLETKDKRKDDQIKDDDYLLGEARQPLWRKVVVPSSLINPYRIVIILRLIILLFFFQFRITTPVHDAFALWLISVVCEFWLALSWFVDQFPKWFPITRETYLDRLSIRFEREGEPSLLAPLDVFVTTADPLKEPPIITANTVLSVLSVDYPVEKVTCYVSDDNASMLLFDTLAETSEFARIWVPFCKKYNIEPRAPEFYFSQKIDYLKDKVHPTFVKDRRAMKREYEEFKVKINALVAKAQKKPEEGWVMQDGNPWPGNDSHDHPGMIKVYLGSSGARDKDGKELPRLVYVSREIRPCYQHNKKAGAMNALLRVSAVLTNAPFVLNLDCDHYTNNSKAIREAMCFLMDPQLGKKLCYVQFPKRFDGVDHHDRYSNHNTIFFDITMKCLDGIQGPVYVGTGCVFNRHALYGYEPPVSKKRPKKSGCCWPLCCCCSCGGDSQLTFDLEEIDEEWLDGYEEQEESSFMSQKKFEKRFGQSPVFIASTLMEGGGLPKGINSRLLIKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRATFKGSVPINLSDRLHQVLKWALGSVEIFLSGHCPLWYGYSGKLKWLQRLAYINIIVYPFTSIPLLVYCAIPVVCLLTGKFIIPILSNLASIWLMALFISIILACVLELRWSGVSIQDRWHNEQFWVIGGVSAHLFAVFQGILRVIAGVDTNLKVRAKAAEDTVFGELYLFKWTTLLIPPTSLVILNMVGIVAGISNAINNGYDSWGPLFGKLFFSFWVIMHLYPFLKGLMGRQNRTPTIVVLWSILLALIFSIIWVRIDIFLPKQTGPVLKQCGLEC. 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04790 842 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 249 423 IPR029044 -
Seca1g04790 842 FunFam Cellulose synthase 249 423 - -
Seca1g04790 842 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 35 807 - -
Seca1g04790 842 Pfam Cellulose synthase 132 835 IPR005150 GO:0016020|GO:0016760|GO:0030244
Seca1g04790 842 Coils Coil 230 250 - -
Seca1g04790 842 SUPERFAMILY Nucleotide-diphospho-sugar transferases 146 659 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04790 Seca-Chr1 150236650 150240968 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04790 26 842 Cell Wall Biosynthesis AT5G17420 69.818 0.0 1230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04790 K10999 - gmx:100777278 1382.47