Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04789 ATGAGTCAAGGACTAATTATTTATCGCCATAATTATTTATCGCCATATTTTCAACACTTAGTATATTCCAATTTTCCTTCTTCTCCAAATCCAACAGTTCTTCTTGGTGTTGTTATACCAGTTTGTGGCCTACTAATTGGGATGATTGGTGTTGGAATCATACTATTCCAAAGAAAAGCCAAACACCTTGATGAAGAGTCCAAAAGCATTGAAAATGATATTCAGTCTATTTGCATGGTATGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACAAATGACTTCAATGACAAGCTCAACATATCAGACTCAGATGACATTCCAACAGTGAACCGCCAGAGTTTTTTGAATGAGATAAAAACATTGACAGGAGCGAGGCACCGCAATATAATAAAGCTTTATGGTTTCTGTTCTAGAAGGAAACAAATGTTTTTGGTTTATGAATATGTAAACAGAGGAAGTTTAGGAAAGGTGCTGTATGGAGAAGAAGGAAAATTGGAGCTAAGCTGGGCTACAAGGGTGAAAATTGTGCAGGGAATAGTACATGCAATTTCCTACCTGCACAGTGATTGCTCCCCACCAATTGTGCATAGAGATGTAACACTAAATAACATACTATTGGACTCAGACTTTGAACCACATCTTGCAGATTTTGGCACAGCAAAGCTGCTAAGTTCCAACACTTCAACCTGGACATCAGTTGCTGGATCCTATGGCTACATGGCTCCAGAGCTAGCACAAACTATGAGGGTCACTGATAAGTGTGACGTCTATAGTTTTGGAGTGGTGGCATTAGAGATAATGATGGGAAACCACCCTGGAGAACTGTTGGCTACACTGTCTTCAAACAAGTCTTTGTCATCAATAGAAGATTCACAGGTTCTTCTGAAGGATGTGCTAGACCAACGCCTTCCACCTCCAACAGGCCAATTAGCTGAAGCAATAGTGTTCACAGTGAGTGTAGCTTTGGCATGCACGCGTGCAGCTCCAGAGTCCAGACCCATGATGCGTTCTGTGGCACAAGAACTATTAGCTACTACACAGGCTTGTCTTTCTGAGCCATTTAGCATGATAACCATAAGCAGTCTTACCGGGTTCCAGAAATAG 1119 0.4102 MSQGLIIYRHNYLSPYFQHLVYSNFPSSPNPTVLLGVVIPVCGLLIGMIGVGIILFQRKAKHLDEESKSIENDIQSICMVWGRDGKFTFSDLVKATNDFNDKLNISDSDDIPTVNRQSFLNEIKTLTGARHRNIIKLYGFCSRRKQMFLVYEYVNRGSLGKVLYGEEGKLELSWATRVKIVQGIVHAISYLHSDCSPPIVHRDVTLNNILLDSDFEPHLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVALEIMMGNHPGELLATLSSNKSLSSIEDSQVLLKDVLDQRLPPPTGQLAEAIVFTVSVALACTRAAPESRPMMRSVAQELLATTQACLSEPFSMITISSLTGFQK. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04789 372 Gene3D Transferase(Phosphotransferase) domain 1 158 358 - -
Seca1g04789 372 SUPERFAMILY Protein kinase-like (PK-like) 115 347 IPR011009 -
Seca1g04789 372 PANTHER LEUCINE RICH REPEAT KINASE 2 37 355 - -
Seca1g04789 372 ProSiteProfiles Protein kinase domain profile. 43 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04789 372 Gene3D Phosphorylase Kinase; domain 1 86 157 - -
Seca1g04789 372 FunFam MDIS1-interacting receptor like kinase 2 154 353 - -
Seca1g04789 372 Pfam Protein kinase domain 113 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04789 372 ProSitePatterns Tyrosine protein kinases specific active-site signature. 199 211 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04789 Seca-Chr1 150234999 150236442 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04789 33 247 Receptor kinase-like Gene Family AT4G08850 39.918 8.61e-54 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g04789 Pkinase 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04789 - - gmx:100786462 544.273