Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04784 ATGATTGGTGTTGGAATCATACTATTCCGAAGAAAAGCCAAACACCTTGATGAAGAGTCCAAAAGCATTGAAAATGATATTCAGTCTATTTGCATGGTATGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACAAATGACTTCAATGACAAGTACTGCATCGGAAAAGGAGGATTTGGGAGTGTTTATAAAGCAGAATTACCTACAGGTCTAGTAGTGGCTGTTAAAAGGCTCAACATATCAGACTCAGATGACATTCCAACAGTGAACCGCCAGAGTTTTTTGAATGAGATAAAAACATTGACAGGAGCGAGGCACCGCAATATAATAAAGCTTTATGGTTTCTGTTCTAGAAGGAAACAAATGTTTTTGGTTTATGAATATGGAATAGTACATGCAATTTCCTACCTGCACAGTGATTGCTCCCCACCAATTGTGCATAGAGATGTAACACTGAATAACATACTACTAGACTCAGACTTTGAACCCCATCTTGCAAATTTTGGCACAACAAAGCTGCTAAGTTCCAACACTTCAACCTGGACATCAGTTGCTGGATCCTATGGCTACATGGCTCCAGAGCTAGCACAAACTATGAGGGTCACTGATAAGTGTGACGTCTATAGTTTTGGAGTGGTGGCATTAGAGATAATGATGGGAAACCACCCTGGAGAACTGTTGGCTACACTGTCTTCAAACAAGTCTTTGTCATCAATAGAGGATTCACAGGTTCTTCTGAAGGATGTGCTAGACCAACGCCTTCCACCTCCAACAGGCCAATTAGCTGAAGCAATAGTGTTCACAGTGAGTGTAGCTTTGGCATGCACGCATGCAGCTCCAGAGTCCAGACCCATGATGCGTTCTGTGGCACAAGAACTATTAGCTACTACACAGGCTTGTCTTTCTGAGCCATTTAGCATGATAACCATAAGCAGTCTTACCGGGTTCCAGAAATAA 969 0.418 MIGVGIILFRRKAKHLDEESKSIENDIQSICMVWGRDGKFTFSDLVKATNDFNDKYCIGKGGFGSVYKAELPTGLVVAVKRLNISDSDDIPTVNRQSFLNEIKTLTGARHRNIIKLYGFCSRRKQMFLVYEYGIVHAISYLHSDCSPPIVHRDVTLNNILLDSDFEPHLANFGTTKLLSSNTSTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVALEIMMGNHPGELLATLSSNKSLSSIEDSQVLLKDVLDQRLPPPTGQLAEAIVFTVSVALACTHAAPESRPMMRSVAQELLATTQACLSEPFSMITISSLTGFQK. 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04784 322 ProSitePatterns Tyrosine protein kinases specific active-site signature. 149 161 IPR008266 GO:0004672|GO:0006468
Seca1g04784 322 SUPERFAMILY Protein kinase-like (PK-like) 32 297 IPR011009 -
Seca1g04784 322 Gene3D Phosphorylase Kinase; domain 1 12 127 - -
Seca1g04784 322 Gene3D Transferase(Phosphotransferase) domain 1 128 311 - -
Seca1g04784 322 ProSitePatterns Protein kinases ATP-binding region signature. 58 80 IPR017441 GO:0005524
Seca1g04784 322 ProSiteProfiles Protein kinase domain profile. 52 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04784 322 PANTHER LEUCINE RICH REPEAT KINASE 2 133 305 - -
Seca1g04784 322 FunFam Leucine-rich repeat receptor protein kinase MSP1 14 132 - -
Seca1g04784 322 Pfam Protein kinase domain 54 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04784 322 Pfam Protein kinase domain 133 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04784 Seca-Chr1 150197464 150198767 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04784 6 197 Receptor kinase-like Gene Family AT4G08850 42.793 2.22e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g04784 Pkinase 1.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04784 - - gmx:100786462 514.612