Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04780 ATGAGATATGACAAGACGATAGAGATAACGGGAGTTCTTCTTGGTGTTGTTATACCAGTTTGTGGCCTACTAATTGGGATGATTGGTGTTGGAATCATACTATTCCGAAGAAAAGCCAAACACCTTGATGAAGAGTCCAAAAGCATTGAAAATGATATTCTGATCTTGTTAAGGCCACAAATGACTTCAATGACAAGAGCGAGGAACCGCAATATAATAAAGCTTTATGGTTTCTGTTCTAGAAGGAAACAAATGTTTTTGGTTTATGAATATGTAAACAGAGGAAGTTTAGGAAAGGTGCTGTATGGAGAAGAAGGAAAATTGGAGCTAAGCTGGGCTACAAGGGTGAAAATTGTGCAGGGAATAGTACATGCAATTTCCTACCTGCACAGTGATTGCTCCCCACCAATTGTGCATAGAGATGTAACACTGAATAACATACTACTGGACTCAGACTTTGAACCACATCTTGCAGATTTTGGCACGGCAAAGCTGCTAAGTTCCAACACTTCAACCTGGACATCAGTTGCTGGATCCTATGGCTACATGGCTCCAGAGCTAGCACAAACTATGAGGGTCACTGATAAGTGTGACGTCTATAGTTTTGGAGTGGTGGCATTAGAGATAATGATGGGAAACCACCCTGGAGAACTGTTGGCTACACTGTCTTCAAACAAGTCTTTGTCATCAATAGAGGATTCACAGGTTCTTCTGAAGGATGTGCTAGACCAACGCCTTCCACCTCCAACAGGCCAATTAGCTGAAGCAATAGTGTTCACAGTGAGTGTAGCTTTGGCATGCACGCGTGCAGCTCCATAG 819 0.4249 MRYDKTIEITGVLLGVVIPVCGLLIGMIGVGIILFRRKAKHLDEESKSIENDILILLRPQMTSMTRARNRNIIKLYGFCSRRKQMFLVYEYVNRGSLGKVLYGEEGKLELSWATRVKIVQGIVHAISYLHSDCSPPIVHRDVTLNNILLDSDFEPHLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVALEIMMGNHPGELLATLSSNKSLSSIEDSQVLLKDVLDQRLPPPTGQLAEAIVFTVSVALACTRAAP. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04780 272 Pfam Protein kinase domain 60 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04780 272 FunFam MDIS1-interacting receptor like kinase 2 92 272 - -
Seca1g04780 272 Gene3D Phosphorylase Kinase; domain 1 35 95 - -
Seca1g04780 272 PANTHER LEUCINE RICH REPEAT KINASE 2 58 272 - -
Seca1g04780 272 ProSitePatterns Tyrosine protein kinases specific active-site signature. 137 149 IPR008266 GO:0004672|GO:0006468
Seca1g04780 272 Gene3D Transferase(Phosphotransferase) domain 1 96 272 - -
Seca1g04780 272 ProSiteProfiles Protein kinase domain profile. 1 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04780 272 SUPERFAMILY Protein kinase-like (PK-like) 56 219 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04780 Seca-Chr1 150156855 150158773 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04780 60 246 Receptor kinase-like Gene Family AT5G65700 49.479 1.59e-49 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g04780 Pkinase 8.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04780 - - gmx:100784185 365.925