Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04778 ATGGCTATGGGAAGGAGTTACATTGATAATAAAGATTTTGAAGAGGAGAAAGAATTCTACAGAAACGCTGTGAATTTGAACGAAAAGCAAGGAAAGAGAGGCCTACTAGAGACCAAAGACAAAAGAAAAGATGACCAGATTAAAGATGATGACTATCTTTTGGGTGAAGCTAGGCAACCACTATGGCGCAAAGTGGCAGTACCTTCAAGCCTAATCAACCCATATCGCATAGTCATCATCCTCCGTCTCATAATCCTACTTTTCTTCTTCCAATTTCGTATCACAACACCAGTGCATGACGCATTTGCCTTGTGGCTAATCTCTGTGGTTTGTGAGTTCTGGTTAGCACTGTCTTGGTTTGTTGACCAGTTCCCCAAGTGGTTCCCCATCACTAGAGAAACTTACTTGGACCGTTTCTCCATAAGGTTCGAGCGTGAAGGGGAACCAAGCCTTCTAGCCCCACTTGATGTCTTTGTCACCACTGCTGACCCTTTGAAGGAACCACCCATCATCACTGCAAACATTGTTCTATCAGTGTTATCTGTTGATTACCCTGTTGAGAAGGTCACCTGTTATGTCTCAGATGACAGTGCATCTATGCTTCTCTTTGATACACTGGCTGAGACTTCTGAGTTTGCAAGAATATGGGTTCCTTTTTGTAAAAAGTACAATATTGAGCCAAGGGCTCCCGAGTTTTATTTCTCTCAGAAAATTGATTTCTTGAAAGATAAGGTGCACCCCACATTTGTAAAGGATCGCAGGGCCATGAAGGTGAGAGAGTATGAAGAATTTAAAGTGAAAATTAATGCATTGGTTGCAAAGGCTCAGAAAAAACCAGAAGAAGGGTGGGTGATGCAGGATGGTAATCCATGGCCTGGGAATGACTCTCATGATCATCCAGGAATGATTAAGTGTAATCGATTACCAGAAGTGGTAATCGATTACCAGACCTCCAGGAATGCATTTTGGCCTCTGGTCTATCTGGGAAGTTCTGGTGCACGGGGCAAGGATGGGAAGGAACTACCAAGGCTTGTGTATGTTTCACGGGAAATACGTCCCTGCTATCAACACAACAAAAAAGCTGGTGCCATGAATGCTTTGCTTCGAGTTTCTGCTGTGCTTACCAATGCACCTTTCGTGTTGAATCTGGATTGTGATCATTACACCAATAATAGCAAAGCTATAAGGGAGGCTATGTGCTTTTTAATGGACCCCCAACTTGGGAAGAAGCTTTGTTATGTTCAATTTCCAAAAAGGTTTGATGGTGTTGATCACCATGACAGATATTCCAATCACAATACTATATTCTTTGATATCACCATGAAATGCCTTGATGGGATTCAAGGTCCGGTGTATGTTGGTACTGGATGTGTGTTCAATAGGCAGGCATTATATGGCTATGAGCCACCAGTCTCTAAGAAAAGGCCAAAGAAGAGTGGTTGTTGCTGGCCTCTGTGCTGTTGTTGTTCTTGTGGTGGTGACTCTCAACTCACATTTGATCTTGAAGAGATTGATGAAGAATGGCTTGATGGCTATGAGGAGCAAGAGGAATCATCCTTCATGTCCCAAAAAAAATTTGAGAAACGATTTGGACAGTCACCAGTTTTCATTGCTTCCACTTTGATGGAAGGTGGTGGACTTCCTAAAGGCATCAATTCACGATTACTAATTAAGGAAGCCATTCATGTTATAAGTTGTGGTTATGAAGACAAAACTGAATGGGGCAAAGAGATTGGGTGGATTTATGGCTCAGTCACAGAAGATATCTTAACTGGGTTCAAGATGTATTGCAGAGGATGGAAATCAGTGTACTGCATGCCTAAGAGAGCAGCTTTTAAAGGGTTTGCTCCAATAAATCTATCAGACCGATTGCACCAAGTTCTGAAATGGGCTCTTGGTTCGGTTGAGATTTTCCTTAGTGACCATTGTCCATTATGGTATGGATATAGTGGAAAATTGAAGTGGCTGCAAAGACTGGCTTACATTTATATCATTGTTTACCCATTCACTTCCATCCCTCTACTTGTATACTGTGCAATTCCAGCTGTTTGCCTTCTAACTGGAAAGTTCATCATCCCCATTCTGTCAAACCTTGCTAGCATTTGGCTAATGGCTCTATTTATCTCCATAATTTTAGCTTGTGTGCTAGAGCTTAGATGGAGTGGGGTTAGCATTCAGGACTGGTGGCGCAATGAGCAATTCTGGGTCATTGGAGGTGTTCCAGCACATCTTTTTGCAGTATTTCAAGGTATCCTCAGAGTTATTGCAGGAGTAGACACTAATTTAAAGGTGAGAGCAAAAGCAGCAGAAGAAACTGTATTTGGAGAACTCTATCTCTTCAAGTGGACTACTCTACTTATCCCACCAACCAGTCTAGTAATCTTGAACATGGTGGGAATTGTGGCTGGCATCTCAAATGCCATTAACAATGGCTATGACTCATGGGGACCATTGTTTGGAAAACTATTTTTCTCCTTTTGGGTGATCATGCACTTATAA 2499 0.4206 MAMGRSYIDNKDFEEEKEFYRNAVNLNEKQGKRGLLETKDKRKDDQIKDDDYLLGEARQPLWRKVAVPSSLINPYRIVIILRLIILLFFFQFRITTPVHDAFALWLISVVCEFWLALSWFVDQFPKWFPITRETYLDRFSIRFEREGEPSLLAPLDVFVTTADPLKEPPIITANIVLSVLSVDYPVEKVTCYVSDDSASMLLFDTLAETSEFARIWVPFCKKYNIEPRAPEFYFSQKIDFLKDKVHPTFVKDRRAMKVREYEEFKVKINALVAKAQKKPEEGWVMQDGNPWPGNDSHDHPGMIKCNRLPEVVIDYQTSRNAFWPLVYLGSSGARGKDGKELPRLVYVSREIRPCYQHNKKAGAMNALLRVSAVLTNAPFVLNLDCDHYTNNSKAIREAMCFLMDPQLGKKLCYVQFPKRFDGVDHHDRYSNHNTIFFDITMKCLDGIQGPVYVGTGCVFNRQALYGYEPPVSKKRPKKSGCCWPLCCCCSCGGDSQLTFDLEEIDEEWLDGYEEQEESSFMSQKKFEKRFGQSPVFIASTLMEGGGLPKGINSRLLIKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMYCRGWKSVYCMPKRAAFKGFAPINLSDRLHQVLKWALGSVEIFLSDHCPLWYGYSGKLKWLQRLAYIYIIVYPFTSIPLLVYCAIPAVCLLTGKFIIPILSNLASIWLMALFISIILACVLELRWSGVSIQDWWRNEQFWVIGGVPAHLFAVFQGILRVIAGVDTNLKVRAKAAEETVFGELYLFKWTTLLIPPTSLVILNMVGIVAGISNAINNGYDSWGPLFGKLFFSFWVIMHL. 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04778 832 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 323 468 IPR029044 -
Seca1g04778 832 SUPERFAMILY Nucleotide-diphospho-sugar transferases 173 704 IPR029044 -
Seca1g04778 832 Pfam Cellulose synthase 155 832 IPR005150 GO:0016020|GO:0016760|GO:0030244
Seca1g04778 832 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 58 832 - -
Seca1g04778 832 Coils Coil 10 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04778 Seca-Chr1 150137537 150144729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04778 49 832 Cell Wall Biosynthesis AT5G17420 67.424 0.0 1127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04778 K10999 - gmx:100777278 1259.97