Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04777 ATGGACCGAGTTGATCTCTTTCCAAGTCCAAAAGAACCAATTAACCGGAAATGTTCCTCCACAGATTGGCCTGTTGAAAAAATTAGATTCCTCTTTCTATACAAAAATCAGTTTTCTGGTCCCATTCCTGAAGAGATTGGAAAACTGAAGGAAATGATAGCGCTAGACCTTTCAGTTAACCATTTCTCTGGTCCAATTCCACCAACCGTGTGGAATCTGACAAACATCATTGTCATAAATCTTTTCTACAACCAGCTCTCGGGAACCATTCCCATTGAAATTGGAAACTTAACCTCACTGCAATTTTTTGATGTTGACACTAATAATTTTGAAGGAGAGTTGCCAGAGACCATTGCTCATCTAACTGCTTTAAAGAAATTTTCTGTGTTCACCAATAATTTCTCGGGCAGCATTCCCGGAGATTTTGGAAAGAATAGTCCTTCATTGACACATATCTACCTTTCAAACAACAGCTTCTCAGGAGAACTGCCTTCTGACTTGTGCAGTGGTATCAATCTACTTGTTTTGGCAGTCAATAACAACAGCTTTTCAGGGCCTTTGCCATTCCTGAGAAATTGTTCATCTCTAGTTAGAGTTCGGCTTGATAATAACCGCTTCACTGGAAACATCACAGAAGCATTTGGGGTTCATCCAAATCTTGTTTTTATCTCAGCTACTGGCAATGAGCTTGTTGGTGAGTTCTCCCCTGAGTGGGGTGAATGTGTCAACTTAACTGAGATAGAAATGAGTAGAAACAAACTCTCTGGAAGAATTCCATCTGAGTTGAGTAAGTTGAGCCGATTACAATATCTAAGCTTGCACTCCAATGAATTCAGTGGCACTATCCCACCAGAATTTGGAAATCTTAGCCTGCTCTACATGTTCAACTTGAGCAGGAACCATTTGTCAGGAGAAATCCCAGAGAGTATTGGAAGATTACCTCATCTTAAAATTCTTGACTTATCAGATAACAACTTCAGTGGAAGCATTCCTAAAGAGCTTAGGGAAATTCCTCAAAACCTTCAAAAGTTAGCATCATTGGAGATTCTCAATGTTTCACACAACCATCTATCAGGGACAATCCTACAATCCTTTTCAAGTATGATCAGCCTTCAATCTATTGATTTTTCTTACAACCACTTGAAAGGTTTAATCCCAACAGGAGGTGTTTTCCAGACAGCAACTGCAGAAGAATATGTTGGAAACTCAGGTTTGTGTGGTGAGGTAAAAGGATTAACCTGTGCCAAAGTATTGTCCTCAGACAACTCTGGTGGGTTTAACAAAAAGGTTCTTCTTGGTGTTGTTATACCAGTTTGTGGCCTACTAATTGGGATGATTGGTGTTGGAATCATACTATTCCGAAGAAAAGCCAAACACCTTGATGAAGAGTCCAAAAGCATTGAAAATGATATTCAGTCTATTTGCATGGTATGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACAAATGACTTCAATGACAAGTACTGCATTGGAAAAGGAGGATTTGGGAGTGTTTATAAAGCAGAATTACCTACAGGTCTAGTAGTGGCTGTTAAAAGGCTCAACATATCAGACTCAGATGACATTCCAACAGTGAACCGCCAGAGTTTTTTGAATGAGATAAAAACATTGACAGGAGCGAAGCACCGCAATATAATAAAGCTTTATGGTTTCTGTTCTAGAAGGAAACAAATGTTTTTGGTTTATGAATATGTAAACAGAGGAAGTTTAGGAAAGGTGTTGTATGGAGAAGAAGGAAAATTGGAGCTAAGCTGGGCTACAAGGGTGAAAATTGTGGAAGGAATAGTACATGCAATTTCCTACCTGCACAATGATTGCTCCCCACCAATTGTGCATAGAGATGTAACACTGAATAACATACTACTGGACTCAGACTTTGAACCACATCTTGCAGATTTTGGCACAGCAAAGCTGCTAAGTTCCAACACTTCAACCTGGACATCAGTTGCTGGATCCTATGGCTACATGGCTCCAGAGCTAGCACAAACTATGAGGGTCACTGATAAGTGTGACGTCTATAGTTTTGGAGTGGTGGCATTAGAGATAATGATGGGAAACCACCCTGGAGAACTGTTGGCTACACTGTCTTCAAACAAGGCTTTGTCATCAATAGGGAATTCACAGGTTCTTCTGAAGGGATGTGCTAGACCAACGCCTTCCACCTCCAACAGGCCAATTAGCTGA 2220 0.4027 MDRVDLFPSPKEPINRKCSSTDWPVEKIRFLFLYKNQFSGPIPEEIGKLKEMIALDLSVNHFSGPIPPTVWNLTNIIVINLFYNQLSGTIPIEIGNLTSLQFFDVDTNNFEGELPETIAHLTALKKFSVFTNNFSGSIPGDFGKNSPSLTHIYLSNNSFSGELPSDLCSGINLLVLAVNNNSFSGPLPFLRNCSSLVRVRLDNNRFTGNITEAFGVHPNLVFISATGNELVGEFSPEWGECVNLTEIEMSRNKLSGRIPSELSKLSRLQYLSLHSNEFSGTIPPEFGNLSLLYMFNLSRNHLSGEIPESIGRLPHLKILDLSDNNFSGSIPKELREIPQNLQKLASLEILNVSHNHLSGTILQSFSSMISLQSIDFSYNHLKGLIPTGGVFQTATAEEYVGNSGLCGEVKGLTCAKVLSSDNSGGFNKKVLLGVVIPVCGLLIGMIGVGIILFRRKAKHLDEESKSIENDIQSICMVWGRDGKFTFSDLVKATNDFNDKYCIGKGGFGSVYKAELPTGLVVAVKRLNISDSDDIPTVNRQSFLNEIKTLTGAKHRNIIKLYGFCSRRKQMFLVYEYVNRGSLGKVLYGEEGKLELSWATRVKIVEGIVHAISYLHNDCSPPIVHRDVTLNNILLDSDFEPHLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVALEIMMGNHPGELLATLSSNKALSSIGNSQVLLKGCARPTPSTSNRPIS. 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04777 739 FunFam Leucine-rich repeat receptor protein kinase MSP1 459 576 - -
Seca1g04777 739 ProSitePatterns Protein kinases ATP-binding region signature. 502 524 IPR017441 GO:0005524
Seca1g04777 739 SUPERFAMILY RNI-like 114 384 - -
Seca1g04777 739 ProSitePatterns Tyrosine protein kinases specific active-site signature. 622 634 IPR008266 GO:0004672|GO:0006468
Seca1g04777 739 PANTHER LEUCINE RICH REPEAT KINASE 2 27 714 - -
Seca1g04777 739 SUPERFAMILY L domain-like 26 143 - -
Seca1g04777 739 Pfam Leucine Rich repeat 345 365 IPR001611 GO:0005515
Seca1g04777 739 FunFam Os07g0541700 protein 577 663 - -
Seca1g04777 739 SUPERFAMILY Protein kinase-like (PK-like) 477 703 IPR011009 -
Seca1g04777 739 Gene3D Ribonuclease Inhibitor 13 189 IPR032675 -
Seca1g04777 739 Gene3D Ribonuclease Inhibitor 190 416 IPR032675 -
Seca1g04777 739 SMART LRR_typ_2 313 337 IPR003591 -
Seca1g04777 739 SMART LRR_typ_2 344 367 IPR003591 -
Seca1g04777 739 SMART LRR_typ_2 265 288 IPR003591 -
Seca1g04777 739 SMART LRR_typ_2 147 170 IPR003591 -
Seca1g04777 739 SMART LRR_typ_2 368 393 IPR003591 -
Seca1g04777 739 Gene3D Transferase(Phosphotransferase) domain 1 577 733 - -
Seca1g04777 739 ProSiteProfiles Protein kinase domain profile. 496 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04777 739 FunFam Leucine-rich repeat receptor-like protein kinase TDR 143 337 - -
Seca1g04777 739 Gene3D Phosphorylase Kinase; domain 1 456 576 - -
Seca1g04777 739 Pfam Protein kinase domain 498 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04777 739 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 23 118 - -
Seca1g04777 739 Pfam Leucine rich repeat 266 326 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04777 Seca-Chr1 150129875 150137329 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04777 25 670 Receptor kinase-like Gene Family AT4G08850 39.658 5.56e-165 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g04777 Pkinase 5.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04777 - - gmx:100785947 861.677