Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04775 ATGACAACTTTTCAAAAGGCTCATGTTCTTCTTTTTCATATACTAGTGATATCTTTGCTTCCATTGAAAATCACATCATCACCAAGAACAGAAGCAGAAGCCCTTGTCAAATGGAAAAACAGTTTATCCCCTCCTCTTCCTCCTCCTTTGAACTCATGGTCACTTGCCAACCTTGGCAACCTTTGCAGCTGGTATGCTGTTGTTTGTGACAACACAAATTCAACGGTCTCAGAGATAAACTTCTCTGGTGCCAATCTCACTGGGACACTCACTGGCTTGGATTTTGCTTCCCTCCCCAACCTCACTAGCCTCAACTTCAATGGTAATAATTTTGGTGGGTCAATACCATCATCAATTGGCAAACTCTCCAAGCTCACTTTCTTGGACTTGGGACACAACTTATTTGAAGACACACTGCCTTCTGAGCTAGGCCAGCTAAGGGAACTTCAATATCTAAGCTTTTACTTCAACAATCTCAATGGTACCATTCCCTATCAGCTCACCAATCTCCCCAAGGTACAGTACCTGAACTTTGGATCAAACTACTTTATATCTCCTCCTGACTGGTCCCAATATTCAGGCATGCCTTACTTAACATATCTTGATTTGGATGAAAATGAATTCACTGCTGATTTCCCAAGTTTCATACTTGAGTGCCAAAATTTGACATTCCTTGACATCTCTCAAAACCATTTTAATGGCACAATACCAGAATCCATGTATAGCAATTTAGTCAAGCTTGAATACCTCAATCTTACCAACTGTGGACTAGAAGGAAAACTGTCATCCAACCTGTCCAGGCTCTCTCATCTCAAAGAACTTCGTATAGGCAATAACATGTTTACTGGTCCTATTCCTACAGAGATAGGATTGATATCAGGGCTTCGATTTCTTGAATTGAACAATATTTCAGCACATGGGGAAATTCCTTCTTCCATTGGTCAACTCAGGGAGCTAAGGAATCTTGATCTCCGTGCTAATTTTTTGAACTCTACAGTCCCTTCTGAGCTTGGCCTATGCACAAATCTCACCTTTCTGAGTTTAGCAGGTAATAATCTGACTGGTCTCTTACCTTTGTCATTAGCTAATCTGACCAATCTATCAGAGTTGGGATTATCAGAAAATTCCTTTTCTGGTCAAATTTCTGCTTCATTGATCTCTAATTGGAGAGAGTTGACATCTCTGCAAGTCCAAAACAACCAATTAACAGGAAAGGTTCCTCCACAGATTGGCCTATTGAAAAAAATCAATATCCTCTTCATGTACAATAATCTGTTTTCTGGCCCCATTCCTGAAGAGATTGGAAACCTGAAGGAAATGACAGAGTTAGACCTTTCAGGAAACCACTTCTCTGGTCCAATTCCACCAACCATTTGGAATCTAACAAACATTTTGGTCATAAATCTTTTCTTCAACAAGCTCTCTGGAACCATTCCCATGGATATTGGAAACTTAACATCACTGCAAGTTTTTGATGTCAACAATAATAATTTGGATGGAGAGTTGCCAGAGACCATTGCTCAACTAACTGCTTTAACTTATTTTTCTGTGTTCACCAATAATTTCTCGGGCAGCATTCCCAGAGATTTTGGAAAGAATAGTCCTTCTTTGAAGCGTATCTACCTTTCAAACAACAGCTTCTCAGGAGAAATGCCTTCTGACTTGTGTAGTGGTTTCAACCTAGATGTTTTGGCAGTCAATAACAACAGCTTTTCAGGGCCATTGCCATCCCTGAGAAATTGTTCATCGCTAGTTAGAGTTCGGCTTGATGAAAACCAGTTCACTGGAAACATCACAGAAGCATTTGGGTTTCATCCAAATCTTAATTTCATCTCACTCAGTGGAAATGAGCTTGTTGGTGAGCTCTCTCCTGAGTGGGGTGAATGTGTCAACTTAACTGAGATTGAAATGAGTAGAAACAACCTTTCTGGAAGAATTCCATCAGAGTTGAGTAAGTTGAATCGATTGCAATATCTAAGCTTGCACTCCAATGAATTTACTGGCACTATCCCACCTGAAATTGGAAATCTAAGCCTGCTCTACATGTTCAACTTGAGCAAGAACCATTTGTCAGGAGAAATCCCAGAGAGTATTGGCAGATTGGCACAGCTTGATTATCTTGATTTATCAGATAACAACTTCAGTGGAAGCATTCCTAGAGAGCTCAGTAATTGTAATCGCTTACTGAGTCTGAATTTAAGCCATAATAACCTATCTGGAGAAATACCATATGAACTTGGCAATCTGTTCTCACTCCAATATTTATTGGACCTCAGCAGCAATTCTCTTTCAGGGGCAATTCCTCAAAACCTTCAAAAGCTAGCATCACTAGAGATTCTCAATGTCTCACACAACCATCTATCAGGGACAATCCCACAATCCTTTTCAAGTATGATCAGCCTTCAATCTATCGATTTTTCTTACAACCACTTGACAGGTTTAATCCCAACTGGTGGTGTTTTCCAGACAGCAACTGCCGAAGCTTATATTGGGAACTCAGGTTTGTGTGGTAAAGTGAAAGGATTAGCTTGTGCCAATGTATTCTCCCCAGATAATTCTGGAGGGGCAAACAAAAAGGTTCTTCTTGGTGTTATTATACCAGTTTGTGGGCTACTATTGCTTGGTGTTGGAATCATACTATTCCGAAGTCAAGCCAAACACCTTGATGAAGAGTCCAAAAACATTGAAAATGATGATCAGTCTATTTGCATGGTATGGGGAAGAGATGGAAAATTCACATTTCCTGATCTCGTTAAGGCCACCAATGACTTCAATGACAAGTGCTGCATTGGAAAAGGAGGATTTGGAACTGTTTATAGAGCAGAATTACCTACAGGTCAAGTAGTTGCTGTTAAAAGGCTCAACATATCAGACTCAGATGACATTCCAGCAGTGAACCGCCAGAGTTTTATGAATGAAATAAGAACACTTACTGGAGTGAGGCACCGCAATATAATAAAGCTTTACGGGTTCTGTTCTAGGAGGAAACAAATGTTCTTGGTTTATGAATATGTAGACAGAGGAAGTTTGGGAAAAGTGATGTATGGAGAAGAAGGAAATTTGGAGCTAAATTGGGCTACAAGGATGAAAATTGTGCAGGGAATAGCACATGCAATTTCCTACCTGCACAGTGACTGCTCTCCACCAGTTGTGCATCGAGATGTAACACTGAATAACATACTACTGGACTCAGACTTTGATCCCCATCTTGCAGATTTTGGCACAGCAAAGCTGCTAAGCTCCAACACTTCAACCTGGACATCAGTTGCTGGATCCTATGGCTATATGGCTCCAGAGCTAGCACAAACTATGAGGGTCACTGACAAGTGTGACGTCTATAGTTTTGGAGTGGTGGTATTAGAGATAATGATGGGAAAACACCCTGGAGAATTCTTGGCTACCCTGTCATCAAACAAGTCTTTGTCATCAATAGAGGACTCACAGGTTCTTCTGAAGGATGTGCTAGACCAAAGGCTTCCACCTCCAATAGGCCAATTAGCTGAAGCAATAGTGTTCACAATGAGTGTAGCTTTGGCATGCACGCGTGCAGCTCCAGAGTCCAGACCCATGATGCGTTCTGTGGCACAAGAATTATCTGCTACTACGCAGGCTTGTCTTTCCGAGCCATTTGGAATGATAACCATAAGCAAGCTTACAGGATTTCAGAAATAG 3672 0.4093 MTTFQKAHVLLFHILVISLLPLKITSSPRTEAEALVKWKNSLSPPLPPPLNSWSLANLGNLCSWYAVVCDNTNSTVSEINFSGANLTGTLTGLDFASLPNLTSLNFNGNNFGGSIPSSIGKLSKLTFLDLGHNLFEDTLPSELGQLRELQYLSFYFNNLNGTIPYQLTNLPKVQYLNFGSNYFISPPDWSQYSGMPYLTYLDLDENEFTADFPSFILECQNLTFLDISQNHFNGTIPESMYSNLVKLEYLNLTNCGLEGKLSSNLSRLSHLKELRIGNNMFTGPIPTEIGLISGLRFLELNNISAHGEIPSSIGQLRELRNLDLRANFLNSTVPSELGLCTNLTFLSLAGNNLTGLLPLSLANLTNLSELGLSENSFSGQISASLISNWRELTSLQVQNNQLTGKVPPQIGLLKKINILFMYNNLFSGPIPEEIGNLKEMTELDLSGNHFSGPIPPTIWNLTNILVINLFFNKLSGTIPMDIGNLTSLQVFDVNNNNLDGELPETIAQLTALTYFSVFTNNFSGSIPRDFGKNSPSLKRIYLSNNSFSGEMPSDLCSGFNLDVLAVNNNSFSGPLPSLRNCSSLVRVRLDENQFTGNITEAFGFHPNLNFISLSGNELVGELSPEWGECVNLTEIEMSRNNLSGRIPSELSKLNRLQYLSLHSNEFTGTIPPEIGNLSLLYMFNLSKNHLSGEIPESIGRLAQLDYLDLSDNNFSGSIPRELSNCNRLLSLNLSHNNLSGEIPYELGNLFSLQYLLDLSSNSLSGAIPQNLQKLASLEILNVSHNHLSGTIPQSFSSMISLQSIDFSYNHLTGLIPTGGVFQTATAEAYIGNSGLCGKVKGLACANVFSPDNSGGANKKVLLGVIIPVCGLLLLGVGIILFRSQAKHLDEESKNIENDDQSICMVWGRDGKFTFPDLVKATNDFNDKCCIGKGGFGTVYRAELPTGQVVAVKRLNISDSDDIPAVNRQSFMNEIRTLTGVRHRNIIKLYGFCSRRKQMFLVYEYVDRGSLGKVMYGEEGNLELNWATRMKIVQGIAHAISYLHSDCSPPVVHRDVTLNNILLDSDFDPHLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVVLEIMMGKHPGEFLATLSSNKSLSSIEDSQVLLKDVLDQRLPPPIGQLAEAIVFTMSVALACTRAAPESRPMMRSVAQELSATTQACLSEPFGMITISKLTGFQK. 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04775 1223 ProSitePatterns Protein kinases ATP-binding region signature. 930 952 IPR017441 GO:0005524
Seca1g04775 1223 Pfam Leucine rich repeat 680 738 IPR001611 GO:0005515
Seca1g04775 1223 Pfam Leucine rich repeat 196 257 IPR001611 GO:0005515
Seca1g04775 1223 Pfam Leucine rich repeat 756 811 IPR001611 GO:0005515
Seca1g04775 1223 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 534 847 - -
Seca1g04775 1223 Gene3D Ribonuclease Inhibitor 194 385 IPR032675 -
Seca1g04775 1223 Gene3D Ribonuclease Inhibitor 519 844 IPR032675 -
Seca1g04775 1223 SMART LRR_typ_2 316 340 IPR003591 -
Seca1g04775 1223 SMART LRR_typ_2 798 823 IPR003591 -
Seca1g04775 1223 SMART LRR_typ_2 485 509 IPR003591 -
Seca1g04775 1223 SMART LRR_typ_2 437 461 IPR003591 -
Seca1g04775 1223 SMART LRR_typ_2 244 268 IPR003591 -
Seca1g04775 1223 SMART LRR_typ_2 364 388 IPR003591 -
Seca1g04775 1223 SMART LRR_typ_2 98 121 IPR003591 -
Seca1g04775 1223 SMART LRR_typ_2 653 677 IPR003591 -
Seca1g04775 1223 SMART LRR_typ_2 701 725 IPR003591 -
Seca1g04775 1223 SMART LRR_typ_2 774 797 IPR003591 -
Seca1g04775 1223 SMART LRR_typ_2 535 558 IPR003591 -
Seca1g04775 1223 SMART LRR_typ_2 341 363 IPR003591 -
Seca1g04775 1223 SMART LRR_typ_2 122 146 IPR003591 -
Seca1g04775 1223 SUPERFAMILY RNI-like 78 403 - -
Seca1g04775 1223 Gene3D Ribonuclease Inhibitor 386 506 IPR032675 -
Seca1g04775 1223 FunFam MDIS1-interacting receptor like kinase 2 370 533 - -
Seca1g04775 1223 FunFam Leucine Rich Repeat family protein, expressed 190 285 - -
Seca1g04775 1223 SUPERFAMILY Protein kinase-like (PK-like) 906 1198 IPR011009 -
Seca1g04775 1223 FunFam MDIS1-interacting receptor like kinase 2 28 189 - -
Seca1g04775 1223 Gene3D Ribonuclease Inhibitor 28 193 IPR032675 -
Seca1g04775 1223 Pfam Protein kinase domain 927 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04775 1223 ProSiteProfiles Leucine-rich repeat profile. 342 363 IPR001611 GO:0005515
Seca1g04775 1223 FunFam MDIS1-interacting receptor like kinase 2 1005 1204 - -
Seca1g04775 1223 CDD STKc_IRAK 930 1198 - -
Seca1g04775 1223 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1050 1062 IPR008266 GO:0004672|GO:0006468
Seca1g04775 1223 Gene3D Phosphorylase Kinase; domain 1 884 1004 - -
Seca1g04775 1223 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Seca1g04775 1223 ProSiteProfiles Protein kinase domain profile. 924 1211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04775 1223 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 508 1200 - -
Seca1g04775 1223 Gene3D Transferase(Phosphotransferase) domain 1 1005 1208 - -
Seca1g04775 1223 FunFam Leucine-rich repeat receptor protein kinase MSP1 887 1004 - -
Seca1g04775 1223 SUPERFAMILY RNI-like 502 813 - -
Seca1g04775 1223 SUPERFAMILY Outer arm dynein light chain 1 383 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04775 Seca-Chr1 150118963 150122943 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04775 25 647 Receptor kinase-like Gene Family AT4G08850 31.789 6.65e-75 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g04775 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04775 - - gmx:100809137 1870.9