Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04773 ATGAAGATAACTCTTCAGATGACAATTTTCTCTCTGGTTTTGTCTTGTATACTTGCAGAGATTTCAGCACAGAAAGAAGCAGAGTCTCTGATTACCTGGATGAACAGTTTGAACTCTCCCTTGCCACCTTCATGGAATCTCAAGAACAACAACAGCAGTCCATGCAATTGGAGTGGCATTAAGTGTGATAAAGCAGGCAGTGTTGTTGAGATAAATCTTCCCAACTCAGGCCTAGATGGAACACTTAACAGGTTTGACTTTTCTGCCTTTCCTAATCTCAATAACTTCAATGTCAATATGAATAACCTGGTTGGAGAGATACCTCCTGGAATTGGAAATGCAACAAAGTTGAAAATACTTGATTTGAGTAACAACAATTTGACCAAGTCAATCCCCCCAGAAATTGGAAAATTGCTAGAGCTACAAGTTCTGCTTCTCTCAAACAATTCACTCTTGAAACAAATACCAACTCAACTTAGCAATTTGCAAAATTTACAGCTTCTTGACCTATGGGCAAATTATTTAGAGAATCCTGACCCAGTTCAATTTAAGGGCATGGCATCCATAACAGGCCTTAATCTCTCCTATAACTATCTCACAGAGGTTCCCCCATTTGTTTATAAATGTCCAAAGTTGGTGTCTCTTGATTTATCACTCAACACTATCACTGGGCAGCTTCCAATTCATTTACTGACCAGTCTTAGGAACTTGACAATTCTATTCCTTACAACAAACAGTATAGAGGGGCCAATTCCAGTAGAGATTAAGAACCTTACAAACCTCAAACAGTTAAAGCTTGGACAAAACAAACTGAATGGTACTATACCTGAGGAGATTGGTTTCTTGTCATACCTTGAGGTGCTTGAATTGCATGAAAATAACTTCCAAGGTCCAATACCATCATCAATTGGAAATCTTCATATGCTTCAGAGGTTGGATCTCAGCTTGTCAGGCCTAAATTCCAGCATCCCAGCTGAGATAGGCTTCTGCACCAACCTTACTTTTGTTGCTATGTCAGGAAATAGCCTGACAGGTCCCTTGCCTCTTTCCATGGCTTCATTAACAAGGATCAGAGAGTTGGGACTATCTGATAACCATTTATCAGGAGAACTTCATCCATCTCTTCTTTCTAGTTGGCCAGAACTCTTTTCATTGCAACTCCAGCTGAATGACATGTCAGGAAGACTTCCTCCTGAGATTGGTAAACTGCATAATCTAACTATCCTATACCTATATCAAAACCAGTTTTCTGGACCAATACCTCCAGAAATTGGAAACTTATCAAGCATCATTCAACTTGCACTGTCCAACAACTATTTCAATGGTTCCATCCCATCAACCATTGGACAGTTACACAAGCTCAGCTCATTAAAACTCTCCTCAAACCAACTAATTGGAGCCCTTCCTCCTGAAATAGGTGATTTGGAAAGCTTACAAGAGCTGGACTTAAGTGAGAACAAGCTTGCAGGACCTTTTCCCCCATCAATAACTCGTTTGAAAAACATCAATCTCCTTTATCTTCATTCCAACAATTTCTCAGGAAGTATTCCTGAAGATTTTGGGCCAAACTTTTTACGTAATGTGAGCTTTGCCAACAATAGTTTTTCTGGAAGGCTCCCTTCAGGAATATGCAGGGGAGGGAATCTTATCTACTTGGCATCCAATTTGAATAATTTCTTTGGTCCAATTCCTGAAAGTCTGAGAAACTGCACTGGACTAAATAGAGTCCTACTTGGAAACAATCTTCTAAGTGGAAATATTACCAATGCATTTGGTATATATCCAGATCTGGACTTCATTGATTTAGGACATAATCAGCTCTCTGGATTGTTATCAAGTAACTGGGGAGAGTGCAAAAAGCTATCAAGTTTTAGCATATCTGCCAATAAAGTACAGGGGAGTATTCCTCCTGAGCTTGGAAAATTGCCAAGGCTGCAAAATCTTGACCTATCTGAAAACAGTCTCACAGGAAATATTCCAGTAGAGTTATTTCACTCATCTTCCTTGCTACTCAAACTAAACTTGAGCAACAATGATCTCTCAGGGAAGATACCAGCTGAGATAGGACAACTTTCACAGCTGCAGTCTCTGGATTTATCAGCAAACAATCTGAGTGGGCCAATTCCAAAGGAACTAGGAAGCTGCTGGAAACTTATATTCTTGAAACTGAGTATGAACAAGTTAGATGGGCAAATGCCATATGAGCTTGGGAATCTGGTTAACTTGCAGCCTCTCTTAGATCTCAGCCATAACTCACTAAGTGGACAGATAATCACACAGCTTGAAAAATTGATATCCTTGGAGGTTTTGAATCTTTCTCATAACCAGCTTTCTGGGGCAATACCTTCAGGTCTCAAAGGACTCATCAGCCTTCAGTCAGTTGATATATCCTACAACAAACTTGAAGGTCCCCTCCCAGACATTGAAGCTTTTCATGAAGCTCCAGCAGAAGCACTTGTAGGTAATGCTGGCCTATGTGCTAATGCTGCTGGCAATGCAAATCTGAGGCCATGTGGTGGAGAAAAAAGCAAGAGAGCTAATAAACATAAGCTGATAATTGCTATAGTCATTCCAATTGTTGCTTTAACCATTCTATTGATTTGCCTTGGAATCTTCATCTTCCGGCGTTATCAAAGAGTTCATCAAGCTGAGGAGGACAAGAGTCCAGATGAAAAGAACTCGTTCTTCATATGGAATTATAGGAATACAATAGAGTTTCAGGATATACGTTCTTCAACTGAGAATTTCAGTGACAAGTATTGCATAGGGAAAGGAGGACAAGGCAGTGTCTACAAGGCAGTGCTTCCAACAGGTGACATCTTTGCAGTAAAACGTCTTCACCAACATGAGGAAATGGACTTCTCTGGATACCAGATCAAGAATTTCACTTCTGAAATCCATGCATTGACTAATATTCGTCATAGGAATATTGTGAAAATGTGTGGGTTCAGATACTCAGCTGATGGATCAATGTTTTTCATAAATGAGTATGTGGAAAGAGGCTCTTTAGAAAGGGTGTTACAGAAGGAAGTGGAGGCAAAAATCTTGACATGGGACATCAGGTTAAACATGATAAAAGGGTTGGCAAATGCATTGTCTTACTTGCACCATGACTGCACACCCAGCATTGTTCACAGAGACATTTCAGGAAACAATATTCTGTTAGACTCTGAGTATGAGCCTAAGATCACTGACTTTGGAACAGCAAGATTGTTAAAAGATGGAGAATCAAACTGGACAGCTCCAGCTGGATCATATGGCTACATAGCACCAGAGCTTGCATTGACAATGAAGGTGACAGAAAAATGTGATGTGTACAGTTTTGGAATTGTTGCATTGCAAATTCTTGTGGGGAGGTACCCTCATGAGATCCTTTCATGTTTAGAGTCTGGGGAATGTGATCAACACTTAGTTGATTTCTTAGATAAGAGAGTAGCTCCTCCGGAAGGTCCTATAGTCTTACTCCTAATAGTGGTTGCAAGCTTGATCCTAAAGTGTATTGAGAAAGATCCTTTGTCACGACCCACCATGCGTCAAGTGTCCCAAGAACTTTTATCAACTACTTGGTGGTCACTCTCTGTCCCTTTTAACATGATCACTCTGCAGAATTTACTTGATATGTAG 3624 0.4015 MKITLQMTIFSLVLSCILAEISAQKEAESLITWMNSLNSPLPPSWNLKNNNSSPCNWSGIKCDKAGSVVEINLPNSGLDGTLNRFDFSAFPNLNNFNVNMNNLVGEIPPGIGNATKLKILDLSNNNLTKSIPPEIGKLLELQVLLLSNNSLLKQIPTQLSNLQNLQLLDLWANYLENPDPVQFKGMASITGLNLSYNYLTEVPPFVYKCPKLVSLDLSLNTITGQLPIHLLTSLRNLTILFLTTNSIEGPIPVEIKNLTNLKQLKLGQNKLNGTIPEEIGFLSYLEVLELHENNFQGPIPSSIGNLHMLQRLDLSLSGLNSSIPAEIGFCTNLTFVAMSGNSLTGPLPLSMASLTRIRELGLSDNHLSGELHPSLLSSWPELFSLQLQLNDMSGRLPPEIGKLHNLTILYLYQNQFSGPIPPEIGNLSSIIQLALSNNYFNGSIPSTIGQLHKLSSLKLSSNQLIGALPPEIGDLESLQELDLSENKLAGPFPPSITRLKNINLLYLHSNNFSGSIPEDFGPNFLRNVSFANNSFSGRLPSGICRGGNLIYLASNLNNFFGPIPESLRNCTGLNRVLLGNNLLSGNITNAFGIYPDLDFIDLGHNQLSGLLSSNWGECKKLSSFSISANKVQGSIPPELGKLPRLQNLDLSENSLTGNIPVELFHSSSLLLKLNLSNNDLSGKIPAEIGQLSQLQSLDLSANNLSGPIPKELGSCWKLIFLKLSMNKLDGQMPYELGNLVNLQPLLDLSHNSLSGQIITQLEKLISLEVLNLSHNQLSGAIPSGLKGLISLQSVDISYNKLEGPLPDIEAFHEAPAEALVGNAGLCANAAGNANLRPCGGEKSKRANKHKLIIAIVIPIVALTILLICLGIFIFRRYQRVHQAEEDKSPDEKNSFFIWNYRNTIEFQDIRSSTENFSDKYCIGKGGQGSVYKAVLPTGDIFAVKRLHQHEEMDFSGYQIKNFTSEIHALTNIRHRNIVKMCGFRYSADGSMFFINEYVERGSLERVLQKEVEAKILTWDIRLNMIKGLANALSYLHHDCTPSIVHRDISGNNILLDSEYEPKITDFGTARLLKDGESNWTAPAGSYGYIAPELALTMKVTEKCDVYSFGIVALQILVGRYPHEILSCLESGECDQHLVDFLDKRVAPPEGPIVLLLIVVASLILKCIEKDPLSRPTMRQVSQELLSTTWWSLSVPFNMITLQNLLDM. 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04773 1207 SMART LRR_sd22_2 258 281 - -
Seca1g04773 1207 SMART LRR_sd22_2 403 429 - -
Seca1g04773 1207 SMART LRR_sd22_2 475 504 - -
Seca1g04773 1207 SMART LRR_sd22_2 138 164 - -
Seca1g04773 1207 SMART LRR_sd22_2 114 135 - -
Seca1g04773 1207 SMART LRR_sd22_2 691 712 - -
Seca1g04773 1207 SMART LRR_typ_2 138 162 IPR003591 -
Seca1g04773 1207 SMART LRR_typ_2 475 499 IPR003591 -
Seca1g04773 1207 SMART LRR_typ_2 691 715 IPR003591 -
Seca1g04773 1207 SMART LRR_typ_2 354 378 IPR003591 -
Seca1g04773 1207 SMART LRR_typ_2 451 474 IPR003591 -
Seca1g04773 1207 SMART LRR_typ_2 258 282 IPR003591 -
Seca1g04773 1207 SMART LRR_typ_2 764 787 IPR003591 -
Seca1g04773 1207 SMART LRR_typ_2 642 666 IPR003591 -
Seca1g04773 1207 SMART LRR_typ_2 186 209 IPR003591 -
Seca1g04773 1207 SMART LRR_typ_2 115 137 IPR003591 -
Seca1g04773 1207 SMART LRR_typ_2 403 427 IPR003591 -
Seca1g04773 1207 SMART LRR_typ_2 306 330 IPR003591 -
Seca1g04773 1207 Gene3D Transferase(Phosphotransferase) domain 1 998 1190 - -
Seca1g04773 1207 SUPERFAMILY Protein kinase-like (PK-like) 892 1184 IPR011009 -
Seca1g04773 1207 ProSiteProfiles Leucine-rich repeat profile. 116 138 IPR001611 GO:0005515
Seca1g04773 1207 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 200 377 - -
Seca1g04773 1207 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Seca1g04773 1207 Gene3D Phosphorylase Kinase; domain 1 877 997 - -
Seca1g04773 1207 SUPERFAMILY RNI-like 524 804 - -
Seca1g04773 1207 Pfam Protein kinase domain 919 1182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04773 1207 FunFam Nuclear pore complex protein NUP107 23 181 - -
Seca1g04773 1207 PRINTS Leucine-rich repeat signature 475 488 - -
Seca1g04773 1207 PRINTS Leucine-rich repeat signature 117 130 - -
Seca1g04773 1207 FunFam Os07g0541700 protein 998 1083 - -
Seca1g04773 1207 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 522 842 - -
Seca1g04773 1207 FunFam Leucine-rich repeat receptor protein kinase MSP1 879 997 - -
Seca1g04773 1207 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Seca1g04773 1207 Gene3D Ribonuclease Inhibitor 527 835 IPR032675 -
Seca1g04773 1207 SUPERFAMILY L domain-like 42 369 - -
Seca1g04773 1207 ProSiteProfiles Protein kinase domain profile. 916 1185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04773 1207 Pfam Leucine rich repeat 164 221 IPR001611 GO:0005515
Seca1g04773 1207 Pfam Leucine rich repeat 643 704 IPR001611 GO:0005515
Seca1g04773 1207 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515
Seca1g04773 1207 Pfam Leucine Rich Repeat 766 788 IPR001611 GO:0005515
Seca1g04773 1207 Gene3D Ribonuclease Inhibitor 376 450 IPR032675 -
Seca1g04773 1207 Gene3D Ribonuclease Inhibitor 451 526 IPR032675 -
Seca1g04773 1207 Gene3D Ribonuclease Inhibitor 276 375 IPR032675 -
Seca1g04773 1207 PANTHER LEUCINE RICH REPEAT KINASE 2 472 1188 - -
Seca1g04773 1207 Gene3D Ribonuclease Inhibitor 22 181 IPR032675 -
Seca1g04773 1207 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1043 1055 IPR008266 GO:0004672|GO:0006468
Seca1g04773 1207 SUPERFAMILY RNI-like 283 517 - -
Seca1g04773 1207 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 394 494 - -
Seca1g04773 1207 Gene3D Ribonuclease Inhibitor 182 275 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04773 Seca-Chr1 150095557 150099574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04773 9 660 Receptor kinase-like Gene Family AT4G08850 35.455 9.06e-98 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g04773 Pkinase 8.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04773 - - ccaj:109803789 1728.38