Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04765 ATGGATGCTGGCTCCTCTACAACCACTTCCTTTGTTCACGGATGGTTTCAGATGGAATATGTTCCAGAGGAGGGTTTTGCTCAATTACCTACTCTCTTCTGTAGGGATCATTTACTAAGTGTTGGAAGGAAAGTTAAATTCATTGATCCCGTTTCTAATTCCTTCCATGTTAATGTTCACAGGCTTTCTGATAAACCTTTTTTTACTAATGGTTGGAAGTTCTTAAAGGATGTGTATAATTTGGTTAATGGTGCTTGGCTAAGGATGGGTTCTGCGAAGAAGGCTTCCACATCTAAGCCAAAGTATAGGTTTTTTTACATGCAGTTCAATCCAGCGGAGGATTTCGAAAAAATACCTTCTCTTTTCACCTCAGAATATGCGGATGAATTGGGTAATGAGGTTGTTTTTATAGACCCAGTAAAAAATGAAATTCATTGTTGTGTTCATGATAATGATTTCAAAATGAGAGTCTTTGATAGGGATTTGGTTGATGTTCATTATCCTCTTCCTGCTACTGATTACCCACTTGCTGCGCACATTGATCCTGATTTTGTACCCTTCCCTGGATATGTTCCACCAAACTTTGATGACATCTTATATTATGACAAGCAGTTGACCGAGTTTGTTGGTAATCCTGTGAACTGTGTTCTTACAGATCCTGATGGTTCTGATTTCCCAGTTAATTTATCATGGTCTAAAAACAAGAAGATTGCTTACATAACCAAAGGATGGAAAGAGTTTTGCACTTCAAAGGGGTTAAAGATTGGCAGTGTTGTTCGTTTCCGCATTGATCCTAGTGAATCTTCAGTTATTTTTGTAAAAACAATACCATAG 834 0.3777 MDAGSSTTTSFVHGWFQMEYVPEEGFAQLPTLFCRDHLLSVGRKVKFIDPVSNSFHVNVHRLSDKPFFTNGWKFLKDVYNLVNGAWLRMGSAKKASTSKPKYRFFYMQFNPAEDFEKIPSLFTSEYADELGNEVVFIDPVKNEIHCCVHDNDFKMRVFDRDLVDVHYPLPATDYPLAAHIDPDFVPFPGYVPPNFDDILYYDKQLTEFVGNPVNCVLTDPDGSDFPVNLSWSKNKKIAYITKGWKEFCTSKGLKIGSVVRFRIDPSESSVIFVKTIP. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04765 277 ProSiteProfiles B3 DNA-binding domain profile. 216 277 IPR003340 GO:0003677
Seca1g04765 277 SUPERFAMILY DNA-binding pseudobarrel domain 25 86 IPR015300 -
Seca1g04765 277 CDD B3_DNA 216 272 IPR003340 GO:0003677
Seca1g04765 277 Pfam B3 DNA binding domain 212 269 IPR003340 GO:0003677
Seca1g04765 277 Gene3D - 190 276 IPR015300 -
Seca1g04765 277 SUPERFAMILY DNA-binding pseudobarrel domain 209 270 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04765 Seca-Chr1 149959082 149962241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04765 197 277 B3 DNA Binding Superfamily AT4G00260 25.000 6.95e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca1g04765 B3 2.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04765 - K08738 csat:104752107 51.9878