Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04752 ATGGGGAGTAGGGTTAGGCACGGGAGAAGATTACAGAAGATAATGAAGTGCCTGTGCCCAGGGGAGCCGGTAGGAAGAGCAGATGAAAAGGCTGATTCGTCGGAATCGCTTGCAACCAAGGATTATTATTCCTCAACGGCAAGTGGGATTTCTGGCCTAGATGGACAAGTTGAGAGTAGGCCAGATTCTGGCAATATAGAAGAAGCCGAATCATCCTTGCGTGAAAGTGGTATCTTGAACTATGAGGAAGCTAGAGCTTTGTTAGGAAGATATGAATATCAAGAAGGAAATATAGAAGCCGCATTACATGTTTTTGAGGGAATAGACATAGGCGCTTTGACTCCCAAGATAAAAAAATTCATTGCCAAAAACAGAGAACGCAGTAAGAGACGTTCCCGGAATTATGCTACTCCACCAATGTCTATACACACGGCTGGATTACTGTTAGAAGCAGTTTTCCTGAAAGCAAAATGTTTGCAGGTTCTTGGAAGGTTTAAAGAAGCAGCTCAAACATGCCAAGTTATTCTGGACATAATTGAGTCTTCATTACCTGAAGGCTTGCCTGAAAATTTTGGTGCTGAATGTAAGTTGCAGGAGACTTTGAGTAAGGCAGTTGAGCTACTTCCAGAACTATGGAAACTTGCTGATTGTCCACGCGAAGTTATTTTGTCTTACCGACATGCACTCCTTCATCAATGGAATCTTGATGCAGAGACCATAGCAAAAATTCAGAAAGAATTTGTTGCTTTTCTTCTGTATAGTGGAGGGGAAGAAATCCCCCCAAATCTTCGTTCCCATATGGACAGTTCATTTGTGCCCAGAAACAACATAGAAGAGGCTATACTTCTTTTAATGATTTTGCTAAGAAAAGTCTCTTTGAATAAAATTCAGTGGGATCCTTCAATTTTGGACCACCTTTCATTTGCTCTTTCTATTTCAGGAGATTTGACAGCTTTAGCCTATCAATGGGAAGAATTACTCCCTGGTACTATCAATCGAAGAGAAAGGTACCATGCCCTTGCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCACTGGATCTTCTTAGAAAATTGTTGAGTAGCAGAGAGGACCCAAAACATGTTCCTGCTTTGTTAATAGCTTCTAAGATATGTTGTGAGAACCCTGATCTTGCAAATGATGGAGTAAGCTTTGCACGCAGATTGCTTGGGAATTTAGATGGAAGATGTGAGCAGTTGGAAAGTCTGGCCAATTGCTTACTTGGTGTTTCACTTTCAACTCACTCAAAAATAGCTATTTCTAATTCTGAGATGTTTGAGAGACAATCTGAGGCACTTCATTACCTGGAAACTGCCAGCAGAATGACCAGAATGAGTGACCCTCTTGTACTCTACTATTTCAGTTTAGAATGTGCAGAGCAAAGGAAGTTGGATGCTGCACATCAATATGCAAAACGCCTTTTAAACTTGGAAGCTGGGTCTAATATTAAAGGGTGGTTATTGTTAGCCCGGATATTATCAGCTCAAAAACAGTTTTTGGATGCTGAATCTATTGTTTGCGCTGCTTTGGATCAAACTGGAATATGGGATCAAGGAGATCTGTTGCGAACAAAAGCTAAACTGCAAATTGCACAGGGCCAGTTAAAAAGTGCCATTGAAACATATATTCAGCTTCTTGCTATTCTTCTAGTTCAGAGAAAAACTTTTGGTTCAAGAAAGAAGCTATATAAGGACTACAGAGATCATGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTTATGTATACATAAGTCTGTCACAGTGGCATGATGCAGAGATGTGTCTTTCCAAATCCAAAGCCATCAAACTCTACTCTGCTTCCAGATGTCATATAATAGGCACAATATACGAAGCAAAGTGCCTTTATAAAGAGGCTCTAAAAGCTTTTCGTGATGCTTTGAACATTGATCCCGGACATGTCTCTAGCTTGATCTCCACTGCCGTGGTTCTTAGACGGTGCAGTAATCAATCAGATCCTGCTGTCAGAAGCTTTCTGATGGATGCACTGCGGCATGACAGATTTAATGCTTCTGCTTGGTATAATCTTGGCATTCTTCACAAGGCTGAAGGTAGAATGCTAGAAGCTGCAGAATGTTTTCAGGCAGCAAACTTTCTTGAAGAATCAGCACCAGTTGAACCTTTCAGATGA 2181 0.4099 MGSRVRHGRRLQKIMKCLCPGEPVGRADEKADSSESLATKDYYSSTASGISGLDGQVESRPDSGNIEEAESSLRESGILNYEEARALLGRYEYQEGNIEAALHVFEGIDIGALTPKIKKFIAKNRERSKRRSRNYATPPMSIHTAGLLLEAVFLKAKCLQVLGRFKEAAQTCQVILDIIESSLPEGLPENFGAECKLQETLSKAVELLPELWKLADCPREVILSYRHALLHQWNLDAETIAKIQKEFVAFLLYSGGEEIPPNLRSHMDSSFVPRNNIEEAILLLMILLRKVSLNKIQWDPSILDHLSFALSISGDLTALAYQWEELLPGTINRRERYHALALCYYGAGKDLVALDLLRKLLSSREDPKHVPALLIASKICCENPDLANDGVSFARRLLGNLDGRCEQLESLANCLLGVSLSTHSKIAISNSEMFERQSEALHYLETASRMTRMSDPLVLYYFSLECAEQRKLDAAHQYAKRLLNLEAGSNIKGWLLLARILSAQKQFLDAESIVCAALDQTGIWDQGDLLRTKAKLQIAQGQLKSAIETYIQLLAILLVQRKTFGSRKKLYKDYRDHARNLEVEIWHDLAYVYISLSQWHDAEMCLSKSKAIKLYSASRCHIIGTIYEAKCLYKEALKAFRDALNIDPGHVSSLISTAVVLRRCSNQSDPAVRSFLMDALRHDRFNASAWYNLGILHKAEGRMLEAAECFQAANFLEESAPVEPFR. 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04752 726 SUPERFAMILY TPR-like 334 556 IPR011990 GO:0005515
Seca1g04752 726 Pfam Tetratricopeptide repeat 618 649 IPR019734 GO:0005515
Seca1g04752 726 Pfam Tetratricopeptide repeat 687 713 IPR019734 GO:0005515
Seca1g04752 726 Gene3D Tetratricopeptide repeat domain 559 722 IPR011990 GO:0005515
Seca1g04752 726 ProSiteProfiles TPR repeat profile. 617 650 IPR019734 GO:0005515
Seca1g04752 726 SMART tpr_5 149 182 IPR019734 GO:0005515
Seca1g04752 726 SMART tpr_5 617 650 IPR019734 GO:0005515
Seca1g04752 726 SMART tpr_5 687 720 IPR019734 GO:0005515
Seca1g04752 726 SMART tpr_5 527 560 IPR019734 GO:0005515
Seca1g04752 726 SMART tpr_5 583 616 IPR019734 GO:0005515
Seca1g04752 726 SMART tpr_5 491 524 IPR019734 GO:0005515
Seca1g04752 726 Gene3D Tetratricopeptide repeat domain 148 558 IPR011990 GO:0005515
Seca1g04752 726 SUPERFAMILY TPR-like 529 713 IPR011990 GO:0005515
Seca1g04752 726 ProSiteProfiles TPR repeat profile. 687 720 IPR019734 GO:0005515
Seca1g04752 726 PANTHER PROTEIN NPG1 15 726 IPR043376 -
Seca1g04752 726 MobiDBLite consensus disorder prediction 49 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04752 Seca-Chr1 149802704 149810308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04752 9 726 Calmodulin-binding Proteins AT4G28600 57.162 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04752 K21843 - gmx:100784353 1122.84