Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04737 ATGGATTCTGCGAGGAGTTGGTTACATAAATTCCAACCACGAGATAGAGTGAGGCCCTCTACGAGGAGGAAGGATGATGTTAATGGCGGAAGCGAAGTTTCAAATGATCCCCTTGATGAAGCAGATCTTTCAAATATAACAAAGCAGAAGGTTGCCGCAGCCAAGCAGTATATTGAGAACCATTACAAGGAGCAAATGAAGAACCTTCATGAAAGGAAAGAGCGTCGAACTATCTTGGAAAAGAAGTTGGCTGATGCTGATGTTTCCGAGGAAGACCAGAATAATCTGCTAAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGTCTTCAAAGGCATAAAATGGGTGTTGATGATTTCGAGTTATTGACTATGATCGGAAAAGGTGCATTTGGGGAGGTCAGAGTTTGTAGAGAAAAGACTACAGGTCATGTATATGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCTTTTCAGGATGATGAGTATCTGTATCTTATTATGGAGTATCTACCAGGTGGGGATATGATGACTCTACTTATGAGAAAAGATATCTTGACTGAAGATGAAGCCCGATTTTATGTAGGAGAAACCGTTTTGGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATTAAGCCTGATAACTTATTGCTTGATAGATATGGACACGTGAGACTATCAGATTTTGGATTATGTAAACCATTAGATTGTAGTACACTTGAAGAGGCAGATTTTTCTACTGGCCAAAATGTGAATGGATCTATGCAGAATGAAGAACGTATAGGTCCAAAACGCACACAACAAGAACAATTGGAACACTGGCAGAAGAATAGAAGGACACTTGCTTATTCTACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAGAAAGGTTATGGAATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTAGTGGGATATCCGCCATTTTATTCCGATGATCCAATGTCAACATGTAGGAAGATAGTAAACTGGAGATCACACTTGAAGTTTCCTGAAGAAGTAATGTTATCTCCAGAGGCTAAAGATCTTATAAGTAACCTTTTGTGTAATGTCAACCAGAGGCTGGGGTCAAATGGTGCAGATGAAATAAAGGTGTTGTATGGTGTGTCCCTTTCTAAATTCTTAATTATGTTATAA 1284 0.3832 MDSARSWLHKFQPRDRVRPSTRRKDDVNGGSEVSNDPLDEADLSNITKQKVAAAKQYIENHYKEQMKNLHERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHVRLSDFGLCKPLDCSTLEEADFSTGQNVNGSMQNEERIGPKRTQQEQLEHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRSHLKFPEEVMLSPEAKDLISNLLCNVNQRLGSNGADEIKVLYGVSLSKFLIML. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04737 427 FunFam Non-specific serine/threonine protein kinase 91 203 - -
Seca1g04737 427 Gene3D Transferase(Phosphotransferase) domain 1 206 417 - -
Seca1g04737 427 SUPERFAMILY Protein kinase-like (PK-like) 102 412 IPR011009 -
Seca1g04737 427 FunFam Non-specific serine/threonine protein kinase 314 418 - -
Seca1g04737 427 SMART serkin_6 120 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04737 427 CDD MobB_NDR_LATS-like 54 115 - -
Seca1g04737 427 Gene3D Phosphorylase Kinase; domain 1 110 205 - -
Seca1g04737 427 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Seca1g04737 427 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 413 - -
Seca1g04737 427 MobiDBLite consensus disorder prediction 1 44 - -
Seca1g04737 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Seca1g04737 427 Pfam Protein kinase domain 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04737 427 ProSiteProfiles Protein kinase domain profile. 120 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04737 427 FunFam Non-specific serine/threonine protein kinase 204 271 - -
Seca1g04737 427 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04737 Seca-Chr1 149624480 149635603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04737 1 414 AGC Kinase Gene Family AT2G20470 80.668 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Seca1g04737 Pkinase 4.7e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04737 K08790 - gmx:100805940 777.704