Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04736 ATGGCAGACCCTGCAGCCATCTATGAGTTTCTGAAGCAGCAACCATCTTCTGCTGCTTCAAGAGCAGGTGCAAAAAGAGCACAACCCCACCCACCTTCCTCTACCCGGACCTTCCAATGCCACTTTTGCCACCGCAAGTTCTACACTTCTCAAGCTCTTGGTGGCCACCAGAACGCTCACAAGCTTGAGAGAGCAGCTGCAAGAAGAACCAACATCCCTTTTCACCACCATAGTGTATCACTCCCATCACCACCACCACCATTGCCATTAGAAACCTCTTTCAAGGTCACCGAGCCCAACAACAAGCCAATGACCATGACCATGACTGTGCCTGAATTTGAACCTGCAAGCCGTTTCTTCCACCATCCTTGCTGGATTGAAGTGGAACCCTTGCAGTTTCAGACCCATCAACACGTTGCAACCACTCTCCCTTCTCTTCCCTTCCATGCTGCTAGTGGCAGTGCTTCTTCCACTTCCACATCTCAACATGTTATGGCTGCTCCTGATGCTTCTGACCATGTCAATCTCGACCTCACTCTTCGCTTGTGA 549 0.5064 MADPAAIYEFLKQQPSSAASRAGAKRAQPHPPSSTRTFQCHFCHRKFYTSQALGGHQNAHKLERAAARRTNIPFHHHSVSLPSPPPPLPLETSFKVTEPNNKPMTMTMTVPEFEPASRFFHHPCWIEVEPLQFQTHQHVATTLPSLPFHAASGSASSTSTSQHVMAAPDASDHVNLDLTLRL. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04736 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Seca1g04736 182 SUPERFAMILY beta-beta-alpha zinc fingers 35 65 IPR036236 -
Seca1g04736 182 MobiDBLite consensus disorder prediction 14 36 - -
Seca1g04736 182 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Seca1g04736 182 PANTHER ZINC FINGER PROTEIN JAGGED 14 182 IPR045320 GO:0003700
Seca1g04736 182 Gene3D Classic Zinc Finger 19 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04736 Seca-Chr1 149621178 149621726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04736 32 70 C2H2 Transcription Factor Family AT5G14010 76.923 1.50e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04736 - - vra:106758350 164.081