Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04729 ATGGGTTTGAGAGATATCGGTGCTTCACTACCCCCTGGGTTTCGGTTTTATCCGAGTGATGAAGAATTGGTGTGTCATTACCTTTACAAAAAGATCACAAATGAGGAACTTCAGAAAGGAACCTTGGTTGAAATTGACTTGCACATATGCGAACCATGGCAACTTCCTGAGGTGGCTAAGCTGAATGCAAATGAGTGGTATTTCTTCAGCTTCCGAGACCGCAAATATGCAACTGGGTTTAGAACCAACAGGGCCACCACATCAGGGTATTGGAAAGCAACAGGGAAGGATCGAACGGTGCTTGATCCAATCACACAGGAGGTTGTAGGGATGAGGAAGACATTGGTGTTCTACAGGAACAGGGCTCCAAATGGCATCAAAACAGGATGGATTATGCATGAGTTTCGCTTGGAGACCCCACACATGCCTCCTAAGGACCAAACTTTTCTTTTGTTGATTACACAGGAGGACTGGGTCTTGTGCAGAGTCTTCCACAAAAGCAAAGATGAAAACACTTCCAAACTCATGTATGAGACCACAACAACTCCTCCATCCCTAACTTTGGCTTCATCATCTCCAACCAACCAAACCATGCCTAGTGGTTATAACAGATCACTTGCTTCTTTCTCTTCCTCTATGGCAACCCTTCATCATCATTTCAACCCCAACCAAAACCCTTCTTCCATGGATCTCCTTCACTTTTCTCGTGAAACAAACACAAACAATAGCACCGTTACTCAAATTAGTTCAAGAGGTCATGATGATGGATATGGGTTCTTATGGGACATGGATTTGGAAGAGAATAATAGCCTAGAAGATGGCGTGGCTTCAAACTTGGACGCAATGAGATTCGAGGTTGATAATAATAATAATAATAATCATATGGTCTTGATATAA 897 0.4292 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKITNEELQKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPITQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKDQTFLLLITQEDWVLCRVFHKSKDENTSKLMYETTTTPPSLTLASSSPTNQTMPSGYNRSLASFSSSMATLHHHFNPNQNPSSMDLLHFSRETNTNNSTVTQISSRGHDDGYGFLWDMDLEENNSLEDGVASNLDAMRFEVDNNNNNNHMVLI. 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04729 298 Gene3D NAC domain 19 171 IPR036093 GO:0003677|GO:0006355
Seca1g04729 298 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 233 - -
Seca1g04729 298 ProSiteProfiles NAC domain profile. 10 166 IPR003441 GO:0003677|GO:0006355
Seca1g04729 298 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Seca1g04729 298 SUPERFAMILY NAC domain 8 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04729 Seca-Chr1 149546148 149551526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04729 6 166 NAC Transcription Factor Family AT1G56010 58.025 1.23e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g04729 NAM 9.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04729 - - gmx:100806284 461.455