Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04728 ATGATGGAAGCAGACTACGGCAGTAATTATTCCAAAATTGAGAAGATGGAAAATCTTACAGTTCCCCCTGGTTTTGCATCCCTAACATCTTTTCTTTTGCAAAAGAGCAAAAAGGTTAAGAAAACCAAAAAATCTACAACCTTTCCAACTGCATCTGGACAAGAGCCAATCTGCATGAAGACTAAACCTGAGATGAATGACACTACTGCATATAATCGACCGTGGATAATATTTGACCAGAGCAACCACAAACCTGAGGAATCTCAAATGGCGCGTCTTCATATGGATGTCCCTTTAAATTCTTGTCGTCCAAAAGGGACCATACATGGATGTCCTAACTGCAGTGATTGTCTGAAGGTAACAGCAAGATGGCGTCCTGAGGATGCAAGAAGAGAAGTTTTGGAAGAAGTTCCTATTTTCCACCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATTGCAAGCATACGCTCCAAAGCAGAACCTCATGGAATTTGTCGTATTATCCCTCCTACTTGCTGGATACCACCATGTTTTCTTGAGAAAAAAAACTTTTGGGAAAACTCCAAATTTGCTGCTCAGATTCAGCGGATTGATGGACACCAAGTTCAGCATGCAGCAGAAATTATGGCTAGCTCTCATGAAAACACAGAGACCAAGAGAAGAGGCGCAAAAGTAACTTTGGACTCTCAGATTGTTAACGGAAGCACCAGCACCACAAATAACCAGAATGTTGAAGACTGTGACAGTGGGTCTGAACCTGGTCCTAAATTCAGTCTCAAAACATTTAAGAAATTTGCAGATGAATTCAAGATCCAATATTTCAATTACAAGGGTAAGGATAAGACTATTGGTTCTGATATAAATTTAACTAGGCGTCAACAGCAGTGGGAGCCATCTGTTGAGAATATTGAGGGTGAATATGGACGGATTGCTCAAAATCCGACTGAAGAAATTGAGGTGCTTTGTGGTAATGCTTTGGATGCTGGAGATTTTGGCAGTGGATTTCCAACAGTTTCTGATCCTTTGGAGGCATACACTTGGCCTGAATATTTGAAATCTGGATGGAACTTAAATAATATACTTTCATGCTCAGGTTCTCTTCTTTCTTTTGAAAGCTCTGAAGCTTCACGTCATTTTGTACCTCGGATTCATGTGGGAATGTGCTTTTCTCCACTCAACTGGAAAGTTGAAGAGCACCAATTATACTCACTATGTTACATGCATTTGGGTGAACCCAGAGTGTGGTATAGTGTCCCTGGAAGATTTGTTGTTGACTTCGAAACAATTTGGAAGAAGTATCTCCCAGATATGAATGCAGGACAGCCCGATATGTGTGATAATTTGGTGATGCAATTATCCTGCTCCATATTGAAGGCAGAGGGTATACCTGTATATCGTTGCGTTCAGTATCCTTGTGAATTTGTTCTTGTCTTCCCTGGAGCATATCATTCTGGATTTGATTGTGGTTTCAACTGTTCTGAAGCAGTAAGTTTTGCTTCTGTCGAGTGGCTGCTCCATGGACAGAATGTTGTTGAGATATATTCTGAACAGAGGAGAAGAACATTAATTTCATACGACAAGCTTTTGCTGGGGGCAGCGAGGGAAGCTGTGAGGGCCCAATGGGAAACTGATCTGTGTATGAAGAGCACCCCAGACAAATTAACAAGTAAAGATGCCTATCGAAGAAACGGGATCTTAGCAAAAGCTTTAACCTCTCGCATTAGAAGTGAAAGTTTGAAGAGGAAATTTCTTTGCACTTCTTTGAGATCACGAAGAATGGATGAAAATTTTGATGCCACTAGTAAAAGGGAATGCAGTATATGTCTGCGTGATTTACACCTGTCTGCCGTAAGTTGTTCATGTTCAGATGACAAGTTTGCATGTCTTGATCATGGAAAACAGCTTTGTTCATGCACTTGGAACAATAAAGTTCTCCTCTACCGTTATGAAATCAGTGAATTGGAAGTTCTATGTCAAGCTTTGGATGGAAAACTAAGTGCAGTCTATAAATGGGCCAAAGAGTATCTTGGATTAACTTTACCTTCATCCTCCATTGCCTCCAAAAGAAAACAAACCCCAGAAAATGCAAATGGTTCAACTTACCCTTCAGATGACTTGAAGATGAAAGAACCTATATCCCAGACAGTATCAAAATGGAAAGAACGTAAATTGCAGGCAATATCAAATGCATCAGATAAGAAACAAATTGAAGTGCCTTCCCAAGTCACAGGGACTATTCATTCAAAAAAGAAGACAACTTCACTTCAGCCAAAAGTACCAGATGAGATGAAAGCAAAAAAGAAAATGATGGGAAGGATTAATTCTGCTGGCATCAAGACTGATATGAAGGCACTTGGGAATAAATTTACAATTTCAAAGAAAGTTGCAGACCCAAAACCGAAAGTATCAACAGTTTCTTCAATTGCAAGCTCACATTACATTTCTTTTCTACAAGAAAGCATGTTACCTGAAGTTTTATCTGACAGTACGAGCACATCTTCGTCTTCAGAATCTGATGGCTCATAA 2532 0.3981 MMEADYGSNYSKIEKMENLTVPPGFASLTSFLLQKSKKVKKTKKSTTFPTASGQEPICMKTKPEMNDTTAYNRPWIIFDQSNHKPEESQMARLHMDVPLNSCRPKGTIHGCPNCSDCLKVTARWRPEDARREVLEEVPIFHPTEEEFKDTLKYIASIRSKAEPHGICRIIPPTCWIPPCFLEKKNFWENSKFAAQIQRIDGHQVQHAAEIMASSHENTETKRRGAKVTLDSQIVNGSTSTTNNQNVEDCDSGSEPGPKFSLKTFKKFADEFKIQYFNYKGKDKTIGSDINLTRRQQQWEPSVENIEGEYGRIAQNPTEEIEVLCGNALDAGDFGSGFPTVSDPLEAYTWPEYLKSGWNLNNILSCSGSLLSFESSEASRHFVPRIHVGMCFSPLNWKVEEHQLYSLCYMHLGEPRVWYSVPGRFVVDFETIWKKYLPDMNAGQPDMCDNLVMQLSCSILKAEGIPVYRCVQYPCEFVLVFPGAYHSGFDCGFNCSEAVSFASVEWLLHGQNVVEIYSEQRRRTLISYDKLLLGAAREAVRAQWETDLCMKSTPDKLTSKDAYRRNGILAKALTSRIRSESLKRKFLCTSLRSRRMDENFDATSKRECSICLRDLHLSAVSCSCSDDKFACLDHGKQLCSCTWNNKVLLYRYEISELEVLCQALDGKLSAVYKWAKEYLGLTLPSSSIASKRKQTPENANGSTYPSDDLKMKEPISQTVSKWKERKLQAISNASDKKQIEVPSQVTGTIHSKKKTTSLQPKVPDEMKAKKKMMGRINSAGIKTDMKALGNKFTISKKVADPKPKVSTVSSIASSHYISFLQESMLPEVLSDSTSTSSSSESDGS. 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04728 843 ProSiteProfiles JmjN domain profile. 137 178 IPR003349 -
Seca1g04728 843 Pfam JmjC domain, hydroxylase 386 500 IPR003347 -
Seca1g04728 843 Pfam jmjN domain 138 171 IPR003349 -
Seca1g04728 843 Gene3D Cupin 122 501 - -
Seca1g04728 843 PANTHER LYSINE-SPECIFIC DEMETHYLASE 131 761 - -
Seca1g04728 843 ProSiteProfiles JmjC domain profile. 351 517 IPR003347 -
Seca1g04728 843 SUPERFAMILY Clavaminate synthase-like 255 543 - -
Seca1g04728 843 SMART JmjN_1 136 177 IPR003349 -
Seca1g04728 843 SMART cupin_9 351 517 IPR003347 -
Seca1g04728 843 MobiDBLite consensus disorder prediction 688 704 - -
Seca1g04728 843 MobiDBLite consensus disorder prediction 688 709 - -
Seca1g04728 843 Pfam C5HC2 zinc finger 607 657 IPR004198 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04728 Seca-Chr1 149495576 149501970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04728 20 796 JUMONJI Transcription Factor Family AT1G08620 42.331 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca1g04728 JmjC 3.4e-30 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04728 K11446 - gmx:100804864 1163.29