Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04723 ATGCACTTTGATGGTTTGACCTGCATGCACCATTTTCATTGTGGTCAAATAGATACAACTTCAGTGAAATGTCTTATCAACAGCATTTCTCGATTCATTCATCTGGTTTCTTGCCAAACAGTGAAACCTATGCCCCTTCAGAAAAACTGTAATAATATGGTTGGTGTGTTGAAATGTTTGAAACCAATGCTTGATGATGTTGTGGATTTTAAAATCCTTGTGGATGAAAATCTGTATAGAGAATGTGAAGAATTGGATTTGTGGGTTAATGAAGCTAGGGAGTTCATTGAAAAATGGAGCCCGAAGATGAGCAAGATTCACAGTGTTCTTCAAAGTGGGGAATTGTTGATCAAGTTACAGAGCACTTCACTTAAGATTTGTGACATAGTTGTTAGATCCCTGAAGTCACCTACATCTGTTTCAATTTTGGCTAATCTTCAGCACCACATACAGGAAATTCAGTGTCTTAAGAAGGAACCAGCAACGGTCTATATAGATGAAGCACTAAGAAATCAAAGAGATAATGTTGAACCTTGCTATGAACATCTAAAGGAAATTATAGAGTTACTTAAATTTACATCAAACCAGGAGCTCCTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCTGAAGTCAATAAAACTAAAGGGGACTTGGATGAAATTAACCAAATTGTGAATCTTGTGTGCAATTTACGTGATTATATGATGAAAATTAAGTGCCCTGAAGTCAAAAGTGGTGTCTCAATCCCGCAATACTTTCGATGCCCTTTATCCTTGGAACTCATGTTGGATCCTGTTATTTTGGCTTCAGGTCAAACATATGAGAGGCAGTCCATCCAAATGTGGCTTGATCATGGACTAACTGTTTGTCCCATGACTCATCATAGACTTGCCCATACAAATCTCATTCCCAATTATACTGTTAAAGCTATGATAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTCCCAGTAACCCTAAGGACAGTAATTCTGCTCATAATTCATCCCCCTCAGATTATTTATTGCATCAAGATTTAGATCGTGTGTGTAGTTTTGGGTCTTTACATAGTAGCAGTTCCAATTCAAAATCATCTCTTCAATCTGGAAATGCATTTGAGAAGCAAAAAGGTGATAACTCTTTCAGATTAAGTGGAGAATCCAATGGATGCCAGAGTGGTGAGACAGAAAAGTTTGAGCAACAATCCCTTGCACCTTCATGTAGTCACAGCAGAAGTGAATCATATTCAAGTTCTATTTCTAGTGCTGATTATGTACTTCCAGTTTCAAAAGAGGTGTCAGGAATATCTATTAAGCATCAAAATGTGGAGTTTTCTAGAGAAATTACTAATGGCTGTCCTGCTTTGTTATCAGGAAAGCAATTTCAAAGCCCTGGACCAAAAATTGGAAGGATGGAGAATGAAAATAAGTATAATAATATTACTGTTACCAGCCATTCAAAAGTTGATTCCCATCCTGTTTCCAACATAGGATATGATGAATTGACCACCATATCTCATGTCAATAAGTTGATTGAAGACCTCCAAAGTCAATCAAATGAAACACAAACTACTGCTGCAGAAGAATTGAGGCTCCTTACCAAACATAACATGGAAAACCGCATCATCATAGGGCAATGTGGGGCTATCATGTATTTACTTCCACTGCTATATTCAGACATGAAGATAAAACAAGAGCATGCTGTGACAGCTCTACTGAATTTGTCAATTAATGACAACAACAAGACCTTGATTATGGAAGCAGGAGCTATAGAACCACTTATCCATGTTTTGCAGACAGGAAATGATGGTGCCAAGGAGAATTCTGCTGCAGCTCTATTCAGCCTCTCTGTATTAGAAAACAATAAGCCAAAAATTGGTCGTTCTGGTGCAGTTAAAGCTTTGGTGGATCTTCTAGCCTCAGGAACTCTGAGAGGGAAGAAGGATGCTGCAACTGCTTTATTTAACCTGTCAATTTTTCACGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCTGTGAAGTTTCTGGTTCTGCTATTGGACCCTGCTGATGGGATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACCTGTCAACAATCCCAGAGGGTCGATTAGATATTGTAAGGGAAGGTGGCATCCCCTTACTGGTTGAAATTGTTGAATCAGGTTCTCAAAGGGGAAAGGAAAATGCTGCTTCCATTCTCTTGCAACTATGCCTTCATAGTGGTAAATTTTGTACACTGGTTCTTCAAGAAGGAGCTGTACCTCCACTAGTTGCATTATCTCAGTCTGGTACACCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGTCATTTTCGTAATCAGCGTGAAGGAGCTATGGGGAAGGGAAAATCATGA 2391 0.3885 MHFDGLTCMHHFHCGQIDTTSVKCLINSISRFIHLVSCQTVKPMPLQKNCNNMVGVLKCLKPMLDDVVDFKILVDENLYRECEELDLWVNEAREFIEKWSPKMSKIHSVLQSGELLIKLQSTSLKICDIVVRSLKSPTSVSILANLQHHIQEIQCLKKEPATVYIDEALRNQRDNVEPCYEHLKEIIELLKFTSNQELLKESIAVEKERLNAEVNKTKGDLDEINQIVNLVCNLRDYMMKIKCPEVKSGVSIPQYFRCPLSLELMLDPVILASGQTYERQSIQMWLDHGLTVCPMTHHRLAHTNLIPNYTVKAMIANWCEENNVKLPSNPKDSNSAHNSSPSDYLLHQDLDRVCSFGSLHSSSSNSKSSLQSGNAFEKQKGDNSFRLSGESNGCQSGETEKFEQQSLAPSCSHSRSESYSSSISSADYVLPVSKEVSGISIKHQNVEFSREITNGCPALLSGKQFQSPGPKIGRMENENKYNNITVTSHSKVDSHPVSNIGYDELTTISHVNKLIEDLQSQSNETQTTAAEELRLLTKHNMENRIIIGQCGAIMYLLPLLYSDMKIKQEHAVTALLNLSINDNNKTLIMEAGAIEPLIHVLQTGNDGAKENSAAALFSLSVLENNKPKIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVLLLDPADGMVDKAVALLANLSTIPEGRLDIVREGGIPLLVEIVESGSQRGKENAASILLQLCLHSGKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAMGKGKS. 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04723 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 592 634 IPR000225 GO:0005515
Seca1g04723 796 ProSiteProfiles U-box domain profile. 251 325 IPR003613 GO:0004842|GO:0016567
Seca1g04723 796 FunFam RING-type E3 ubiquitin transferase 495 789 - -
Seca1g04723 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 326 IPR013083 -
Seca1g04723 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 551 593 IPR000225 GO:0005515
Seca1g04723 796 SUPERFAMILY RING/U-box 250 327 - -
Seca1g04723 796 PANTHER U BOX DOMAIN-CONTAINING 45 784 - -
Seca1g04723 796 FunFam RING-type E3 ubiquitin transferase 252 324 - -
Seca1g04723 796 Coils Coil 207 227 - -
Seca1g04723 796 CDD RING-Ubox_PUB 253 305 IPR045210 -
Seca1g04723 796 Gene3D - 648 793 IPR011989 -
Seca1g04723 796 Pfam Armadillo/beta-catenin-like repeat 625 661 IPR000225 GO:0005515
Seca1g04723 796 Pfam Armadillo/beta-catenin-like repeat 581 620 IPR000225 GO:0005515
Seca1g04723 796 SUPERFAMILY ARM repeat 505 783 IPR016024 -
Seca1g04723 796 Gene3D - 495 647 IPR011989 -
Seca1g04723 796 SMART Ubox_2 255 318 IPR003613 GO:0004842|GO:0016567
Seca1g04723 796 Pfam U-box domain 252 323 IPR003613 GO:0004842|GO:0016567
Seca1g04723 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 674 715 IPR000225 GO:0005515
Seca1g04723 796 SMART arm_5 581 621 IPR000225 GO:0005515
Seca1g04723 796 SMART arm_5 663 702 IPR000225 GO:0005515
Seca1g04723 796 SMART arm_5 622 662 IPR000225 GO:0005515
Seca1g04723 796 SMART arm_5 540 580 IPR000225 GO:0005515
Seca1g04723 796 SMART arm_5 703 743 IPR000225 GO:0005515
Seca1g04723 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 633 675 IPR000225 GO:0005515
Seca1g04723 796 MobiDBLite consensus disorder prediction 362 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04723 Seca-Chr1 149413552 149418621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04723 17 796 U-box Gene Family AT3G54790 54.765 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04723 - - gmx:100804684 1218.76