Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04714 ATGGGGAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAAAGGGCCATGGACTCCAGAAGAAGATCAAATCCTCATCAATTACATCAACACCTATGGTCATGCCAATTGGCGTGCTCTGCCCAAACATGCTGGGCTGCTAAGGTGTGGAAAGAGTTGTAGACTACGGTGGACAAATTATCTGAGACCGGACATCAAACGGGGCAACATTACCAGAGAAGAAGAGGATGAAATAATCAAGTTGCATGAAATGTTGGGAAACAGATGGTCAGCTATAGCAGCAAAGTTACCGGGCCGAACAGATAACGAGATAAAAAACGTGTGGCACACCCACTTGAAGAAAAGGCTGCCACAACACCAACAACAGATCAATGACCCAAAACGAAATAAAAAACAAACCAATATGGACGCTTTCTCCAAATCCAAATCCAACCAAGACCTTAAACAACAAGAGCAAGAAGTGGATGGGCCACAATCTCCTCCACAGTGTTCTAGTGACATCTCCTCCCTAACCACTAGTGATAATAATAATAATAGCATCAATGCTACTACTAATCAAGACATTATGTTCATAGATAACAATAATAATAATGATGTTGATTCGCCAGAGAATAACCTTGCATTGGATGAGGATTTCTGGTTGGAAGTGTTGTCATCTGATAATTCCAGTGATGGTGCTGATTATCAGTTTCAATTGCCAATATTCTCTCCAATAGGGACTGAAGAAGGGGTCCTTAGTGGTAGTTCAGGCATGGATTTTTGGTGCGATGTTTACGCGAGAGCTGAGGAAATAACAGAGGTATTGGAATTGTAA 813 0.4219 MGRAPCCEKMGLKKGPWTPEEDQILINYINTYGHANWRALPKHAGLLRCGKSCRLRWTNYLRPDIKRGNITREEEDEIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLPQHQQQINDPKRNKKQTNMDAFSKSKSNQDLKQQEQEVDGPQSPPQCSSDISSLTTSDNNNNSINATTNQDIMFIDNNNNNDVDSPENNLALDEDFWLEVLSSDNSSDGADYQFQLPIFSPIGTEEGVLSGSSGMDFWCDVYARAEEITEVLEL. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04714 270 FunFam Transcription factor MYB15 68 153 - -
Seca1g04714 270 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 223 - -
Seca1g04714 270 CDD SANT 16 61 IPR001005 -
Seca1g04714 270 Gene3D - 11 67 - -
Seca1g04714 270 MobiDBLite consensus disorder prediction 118 135 - -
Seca1g04714 270 MobiDBLite consensus disorder prediction 136 181 - -
Seca1g04714 270 MobiDBLite consensus disorder prediction 114 181 - -
Seca1g04714 270 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca1g04714 270 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca1g04714 270 SMART sant 13 63 IPR001005 -
Seca1g04714 270 SMART sant 66 114 IPR001005 -
Seca1g04714 270 CDD SANT 71 112 IPR001005 -
Seca1g04714 270 Gene3D - 70 153 - -
Seca1g04714 270 FunFam MYB-related transcription factor 13 66 - -
Seca1g04714 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca1g04714 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca1g04714 270 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca1g04714 270 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca1g04714 270 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04714 Seca-Chr1 149337987 149339828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04714 1 270 MYB Transcription Factor Family AT2G31180 50.534 6.89e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g04714 Myb_DNA-binding 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04714 K09422 - gmx:100775603 360.533