Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04707 ATGGATTTTGAATCTTCTTTTTTCCAAAACCAAAACCTTCACTTCTTCCATGAAAATTCACACCTTTTTTCTTGGGACAATGACTTCAATTTTTTCAATGATGACAACATCTTTCCCTTCAATAACTTCATCGACCATTCACAATCACAAACCAATGAATTATCATCATCACCTTCTGAATCAAACTCTTCAGGATCTCTAGCTAGTGTTGAGTCACAAGAAGTCTCTTCCAATTCAGCTTGTATTGCATCTCCCCCTTCACCACCAAAGGAAAATAGTAAGAGGGTGTTCAGGGGAGTAAGGAGAAGACCATGGGGGAAATTTGCAGCAGAGATAAGGGATTCAACAAGAAATGGGGTTAGAGTGTGGATTGGAACATTTGATACAGCTGAAGCAGCAGCTTTGGCTTATGACCAAGCAGCTTTCACTACAAGGGGTTCATTGGCAGTGCTGAATTTTCCAGAGGAAGTGGTAAGAGAGTCCCTTAAAGATATGGTTAACAAGCCTTGGGAAGAGGGTACTTCCCCTGTGTTGGCACTCAAGAGAAAGCATAGCATGAGGAGTAAGCCTAGTAAAAAGAAAACCAAAAAGGCTCAAAGTGATCACCATCAGATCATGGAGATTAACACTTGCCAAAATGTGTTGGTGTTGGAGGATTTGGGTGAAGAGTATCTAGAGCAACTTTTGAGCTTGACTTCCTAA 702 0.4088 MDFESSFFQNQNLHFFHENSHLFSWDNDFNFFNDDNIFPFNNFIDHSQSQTNELSSSPSESNSSGSLASVESQEVSSNSACIASPPSPPKENSKRVFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFTTRGSLAVLNFPEEVVRESLKDMVNKPWEEGTSPVLALKRKHSMRSKPSKKKTKKAQSDHHQIMEINTCQNVLVLEDLGEEYLEQLLSLTS. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04707 233 MobiDBLite consensus disorder prediction 49 70 - -
Seca1g04707 233 Pfam AP2 domain 96 146 IPR001471 GO:0003700|GO:0006355
Seca1g04707 233 PANTHER DNA-BINDING DOMAIN 58 229 IPR044808 GO:0003700|GO:0009873
Seca1g04707 233 SMART rav1_2 96 160 IPR001471 GO:0003700|GO:0006355
Seca1g04707 233 ProSiteProfiles AP2/ERF domain profile. 96 154 IPR001471 GO:0003700|GO:0006355
Seca1g04707 233 MobiDBLite consensus disorder prediction 78 97 - -
Seca1g04707 233 CDD AP2 97 155 IPR001471 GO:0003700|GO:0006355
Seca1g04707 233 FunFam Ethylene-responsive transcription factor 2 95 155 - -
Seca1g04707 233 SUPERFAMILY DNA-binding domain 96 155 IPR016177 GO:0003677
Seca1g04707 233 Gene3D AP2/ERF domain 96 156 IPR036955 GO:0003700|GO:0006355
Seca1g04707 233 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Seca1g04707 233 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Seca1g04707 233 MobiDBLite consensus disorder prediction 183 202 - -
Seca1g04707 233 MobiDBLite consensus disorder prediction 183 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04707 Seca-Chr1 149247324 149248025 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04707 93 229 AP2-EREBP Transcription Factor Family AT3G23240 62.774 3.74e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca1g04707 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04707 K14516 - gmx:100779524 247.284