Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04706 ATGGAGGGAGAGAGACATGGAAACTCAGAGGTTCGATACAGAGGGATTCGTAGAAGGCCATGGGGTAAGTTTGCAGCAGAGATTCGTGACCCTACAAGAAAAGGTGCTCGCATTTGGCTCGGAACCTTTGAAACCGCCGAGCAGGCTGCACGTGCTTATGATGCTGCTGCTTTTCACTTTCGTGGTCACAGAGCCATTCTCAACTTCCCAAATGAGTATGCTCATTCTCTTAATCCAAACTCTTCAACTATTTCATTGCCTTTACCTCCTCCTCCTCCTTCAATTTCCTATTCTGGTGAGGGTAATTCGTTAAGTCAACAAGAGGATAATGATGATATTTTTGAGTTATCATATTTGGACAAGAAGTTGTTGGAAGAACTCCTTCAAGCGCCAGATGCTACAGCAAGATATAGCTAA 417 0.4412 MEGERHGNSEVRYRGIRRRPWGKFAAEIRDPTRKGARIWLGTFETAEQAARAYDAAAFHFRGHRAILNFPNEYAHSLNPNSSTISLPLPPPPPSISYSGEGNSLSQQEDNDDIFELSYLDKKLLEELLQAPDATARYS. 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04706 138 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Seca1g04706 138 SUPERFAMILY DNA-binding domain 12 71 IPR016177 GO:0003677
Seca1g04706 138 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Seca1g04706 138 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Seca1g04706 138 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Seca1g04706 138 Pfam AP2 domain 12 63 IPR001471 GO:0003700|GO:0006355
Seca1g04706 138 PANTHER DNA-BINDING DOMAIN 8 126 IPR044808 GO:0003700|GO:0009873
Seca1g04706 138 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
Seca1g04706 138 MobiDBLite consensus disorder prediction 79 107 - -
Seca1g04706 138 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Seca1g04706 138 FunFam Ethylene-responsive transcription factor 2 11 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04706 Seca-Chr1 149212332 149212748 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04706 8 130 AP2-EREBP Transcription Factor Family AT3G23230 56.098 7.17e-41 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca1g04706 AP2 6.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04706 - - gmx:100500462 159.073