Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04705 ATGGATTTTGATTCTTCTCTTTTGTGGTACCAAAGTCAAGAATCCTCTCCATATGCTAATTCATGGGAAAAGTTGTTTTTGTTTAACAACATTCCCTTCGATTTAGTGGTGGAATCGTCCTTGGACTCCTCATCAAGTGGAGGAACATTAATGGAGTTACAAGAACATATTGAAGAAAAAGATTCACCAATTACACCACAACAACCACTAGCACTACCAATTGGTACTACAAATCCACAATCCGTATTACCAAAATCCAAACGAGAGAAGAGGCAATACAGAGGAGTGAGGAGAAGGCCATGGGGAAAATTCGTGGCAGAGATAAGGGACACAACAAGAAATGGGGTTCGAGTTTGGATCGGGACATTTGATACAGCTGAGGCAGCTGCTTTGGCTTATGACCAAGCAGCTTTTTTGACTCGGGGGTTTGGGGCTACCCTTAATTTCTCAGAGCAAGTGGTGAGGGAGTCCCTTAAGGACATTGGTTTTAGGACATTGAATAATTGCTCACCTTTGTTGGAACTGAAAAGGATGCATCTAATGAGATCAAAATCGATATCTAAGGCTGCAGGTATTGGTAGTAATAAAAAGGCCAACAGGGCAACTTGTAGTAGCGGCAGTGAGTTAGGCAATGCTCAAAATGTGTTGGTGTTGGAGGATTTGGGGCCTGAATATCTAGAGCAACTTTTGAGCTCCACTTTCCCCTGCATAGCGTGA 717 0.4268 MDFDSSLLWYQSQESSPYANSWEKLFLFNNIPFDLVVESSLDSSSSGGTLMELQEHIEEKDSPITPQQPLALPIGTTNPQSVLPKSKREKRQYRGVRRRPWGKFVAEIRDTTRNGVRVWIGTFDTAEAAALAYDQAAFLTRGFGATLNFSEQVVRESLKDIGFRTLNNCSPLLELKRMHLMRSKSISKAAGIGSNKKANRATCSSGSELGNAQNVLVLEDLGPEYLEQLLSSTFPCIA. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04705 238 PANTHER DNA-BINDING DOMAIN 68 230 IPR044808 GO:0003700|GO:0009873
Seca1g04705 238 FunFam Ethylene-responsive transcription factor 2 91 151 - -
Seca1g04705 238 Pfam AP2 domain 92 138 IPR001471 GO:0003700|GO:0006355
Seca1g04705 238 ProSiteProfiles AP2/ERF domain profile. 92 150 IPR001471 GO:0003700|GO:0006355
Seca1g04705 238 SMART rav1_2 92 156 IPR001471 GO:0003700|GO:0006355
Seca1g04705 238 MobiDBLite consensus disorder prediction 69 83 - -
Seca1g04705 238 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Seca1g04705 238 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Seca1g04705 238 CDD AP2 92 152 IPR001471 GO:0003700|GO:0006355
Seca1g04705 238 Gene3D AP2/ERF domain 91 152 IPR036955 GO:0003700|GO:0006355
Seca1g04705 238 SUPERFAMILY DNA-binding domain 92 151 IPR016177 GO:0003677
Seca1g04705 238 MobiDBLite consensus disorder prediction 67 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04705 Seca-Chr1 149199715 149200431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04705 86 233 AP2-EREBP Transcription Factor Family AT3G23240 52.703 2.48e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca1g04705 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04705 K14516 - gmx:100818907 233.802