Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04701 ATGGAAAAGGACTTGAAGGATAAGGTCAAGGAAGGGGAAACAAAGCAAGTCAAATACAGAGGAGTACGGTGCAGGCCTTGGGGAAAATTTGCTGCAGAGATTCGGGATTCAGCTAGGCATGGAGCTAGAGTGTGGCTTGGGACTTTTAACACTGCAGAAGAGGCTGCAAGAGCTTATGATCGTGCTGCTTTTCAAATGAGAGGTGCTCTGGCTATTCTCAACTTTCCACATGAACATATTCCATGCAATGTGGCTTCTCCTCCTACCAAGTCCTGTTCTTCTTCTTCTTATTCCTCATCTTCAACGGTTAATACTGAGAAACAAGTTTTTGAATTTGAGTATTTGGATGACAAATTGTTAGAGGAACTCCTCAATTGTGATGAGAATGTATACCATCAGGAAAAACTTGCTTAA 414 0.4203 MEKDLKDKVKEGETKQVKYRGVRCRPWGKFAAEIRDSARHGARVWLGTFNTAEEAARAYDRAAFQMRGALAILNFPHEHIPCNVASPPTKSCSSSSYSSSSTVNTEKQVFEFEYLDDKLLEELLNCDENVYHQEKLA. 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04701 137 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Seca1g04701 137 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Seca1g04701 137 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Seca1g04701 137 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Seca1g04701 137 PANTHER DNA-BINDING DOMAIN 13 127 IPR044808 GO:0003700|GO:0009873
Seca1g04701 137 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Seca1g04701 137 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Seca1g04701 137 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Seca1g04701 137 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Seca1g04701 137 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04701 Seca-Chr1 149165245 149165658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04701 13 128 AP2-EREBP Transcription Factor Family AT3G23230 64.228 1.00e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca1g04701 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04701 - - gmx:100800069 169.859