Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04700 ATGCTAAAAGCTCTGCCTAATTGCAGCCATGCCTTTCACTTGGATTGCATTGACATTTGGCTTCAAACAAATTCAAATTGCCCTCTTTGTAGATCAAGCATTTCAGGCAACACAAGCTGTCCAATGGACCATATCATAGCTCCAAGCTCTTCTCCTCAGGATTCTCAATTGCTCTCTAACATGGGAAATGATGAAGATTTTGTGGTCATTGAATTGGGGAGAGAAAATGGGGGAACATTGCCTCAGATTCAGAGAGAAAGAAATGACTCAAGGGAAAGCAGTAGAAGTCACTCAACAAGGAAGATGGAGCAGAAGCTGATGCACTTGAAACCAAAGAAGTGGCACCATGTTTCAATCATGGGAGATGAGTGTATTGATGTTAGAAAGAAAGATGATCAGTTTTCTATTCAGCCTATAAGAAGATCTTTCTCAATGGATTCTGCAAATGATAGACAAGTTTACTTAGATGTTCAAGCCAGAGTACAACAGAATAGACATCACACTGAGGCTAGTGCTAGTGAAGATTGTAATAGCACAGGCCGAAGATCATTCTTTCCATTTTGTTATGGTCTGGGATAA 579 0.4024 MLKALPNCSHAFHLDCIDIWLQTNSNCPLCRSSISGNTSCPMDHIIAPSSSPQDSQLLSNMGNDEDFVVIELGRENGGTLPQIQRERNDSRESSRSHSTRKMEQKLMHLKPKKWHHVSIMGDECIDVRKKDDQFSIQPIRRSFSMDSANDRQVYLDVQARVQQNRHHTEASASEDCNSTGRRSFFPFCYGLG. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04700 192 ProSiteProfiles Zinc finger RING-type profile. 8 31 IPR001841 -
Seca1g04700 192 Pfam RING-H2 zinc finger domain 5 31 IPR024766 GO:0008270
Seca1g04700 192 SUPERFAMILY RING/U-box 4 37 - -
Seca1g04700 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 35 IPR013083 -
Seca1g04700 192 MobiDBLite consensus disorder prediction 85 103 - -
Seca1g04700 192 MobiDBLite consensus disorder prediction 78 103 - -
Seca1g04700 192 PANTHER RING-H2 FINGER PROTEIN ATL16 1 190 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04700 Seca-Chr1 149158915 149160628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04700 2 166 C3H Transcription Factor Family AT1G04360 46.561 2.02e-45 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04700 K19041 - gmx:100809883 286.189