Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04698 ATGGACATATCTGATTTTCTTCTTTTCAGAGAAGCAAGGCCAAAGTTGACAATGACAATGTTCTTGGAGTTGTTTATTCTTTCCCTCACAGGGATCAGTCTTGCCCCAAACATGTATTTTGCAAGTTTGAAATATACATCTCCTTCTTTTGTTGCATCAATGGTTAACACAATTTCATCTCTAACATTTGTGATTGCAGTTGCATTAAGGCTAGAGGCTGTTGACATTAAGAACCCTCGTGGGGTAGCTAAAATTATTGGAAGCATACTATCATTGATTGGTGCCTTGACCATGGCTTTGTATAAAGGACATGCAATAAAAAGCTTGCAGGGTGCCCCATTCCATATCAGAGACAAATCTGTTCATAATAATTGGATTAAAGGATCAATTTTGGCTGTTGCAAGTTGCATATCATGGTCTTTATGGTACATAATGCAGGCAATTATAGTGAAGAAATATCCAGCACAATTATCCCTAAGTGCATGGATAAATTTGATAGGGGCAGCACAGTCTGCTGTCTTTACTGTACTTGTGCAACATAAGCCTAGAGCATGGTTGACTACATCAAGTATAGAACTCTGTTGCATATTTTATGCTGGAGTTATATGTTGTGGTTTGATTATCTTTGTTCAAATCTGGGCACTGGAACAAAAAGGGCCAGTCTTTGTGAGCATGTTTAATCCTCTTGGAACAGTTTTAGTGGCAATCCTAGCATATTTTGTTTTGGGGGAACAACTTCACATTGGCAGGTAG 753 0.3838 MDISDFLLFREARPKLTMTMFLELFILSLTGISLAPNMYFASLKYTSPSFVASMVNTISSLTFVIAVALRLEAVDIKNPRGVAKIIGSILSLIGALTMALYKGHAIKSLQGAPFHIRDKSVHNNWIKGSILAVASCISWSLWYIMQAIIVKKYPAQLSLSAWINLIGAAQSAVFTVLVQHKPRAWLTTSSIELCCIFYAGVICCGLIIFVQIWALEQKGPVFVSMFNPLGTVLVAILAYFVLGEQLHIGR. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04698 250 SUPERFAMILY Multidrug resistance efflux transporter EmrE 12 103 - -
Seca1g04698 250 PANTHER WAT1-RELATED PROTEIN 9 248 IPR030184 GO:0016020|GO:0022857
Seca1g04698 250 Pfam EamA-like transporter family 127 248 IPR000620 GO:0016020
Seca1g04698 250 SUPERFAMILY Multidrug resistance efflux transporter EmrE 174 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04698 Seca-Chr1 149129778 149132704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04698 10 249 Nodulin-like Gene Family AT3G18200 35.537 4.76e-54 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04698 - - gmx:100808275 380.178