Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04692 ATGACTGGTTCTGGTTCTCCCTGTGGAGCCTGCAAATTCTTGAGAAGGAAATGTGTCAGGGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAGGGTTCCACCCATTTTGCTGCCATTCATAAGGTCTTTGGTGCAAGTAATGTCTCAAAACTCCTTGCTCATCTCCCTGTTACTGACCGTTGTGAAGCTGCTGTCACTATTTCCTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGTTGTGTTGCACATATCTTTTCCCTTCAACAACAGGTTGTGGTCAATTTACAAGCACAACTGGCTTATCTCAGGGAACAAGCAGCTCAGAGCTGTTTCAATGTTTCAGCAATTGAAAACCCTAATGAGAAATGCTTTGGAAAACCTACTACTTTCCCCCAAGATCTTCAAAGTTGGTTCCAGGTGGAAAATTCCAACATGGGTCAACAATTTCTTCCAAATTTTTCAACTTGTCCCTCAACAACACAATATTATGGGAATAGTACTACTACTACTACTACCCTCATGGACCCAAACCCTATTGGAAATTATGAGAATTCAGGAAGCTTGGAAGAAAGCATCTCATTTTCTAGCTTTGATGAGAGTTGTAATTATAACTCCATCTCCTTTGACATGCAAAGGCAGTGGGCCTTTGACATGTAA 666 0.4114 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGSTHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQARLQDPIYGCVAHIFSLQQQVVVNLQAQLAYLREQAAQSCFNVSAIENPNEKCFGKPTTFPQDLQSWFQVENSNMGQQFLPNFSTCPSTTQYYGNSTTTTTTLMDPNPIGNYENSGSLEESISFSSFDESCNYNSISFDMQRQWAFDM. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04692 221 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Seca1g04692 221 ProSiteProfiles LOB domain profile. 6 109 IPR004883 -
Seca1g04692 221 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04692 Seca-Chr1 149008193 149009380 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04692 7 211 AS2 family AT3G58190 52.804 1.18e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca1g04692 LOB 3.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04692 K13945 K13944 gmx:100816960 330.487