Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04688 ATGGCTTCTGCAACTGGCACTGGAACCGGTTCTGGTTCTGGTTCTGGTTCTCCTTGTGGGGCATGCAAGTTCCTCAGAAGAAAGTGTGCAGCTGACTGCATCTTTGCACCTTACTTTTGCTCTGAACAAGGTCCTGCTAGATTTGCAGCCATCCATAAAGTGTTTGGTGCCAGCAATGTTTCCAAGTTGCTTTTGCATATACCAGCTCATGATCGTTGTGAAGCTGTTGTCACTATTGCTTATGAAGCTCAAGCTCGTATCAGAGACCCTGTTTATGGCTGTGTCTCCCACATTTTTGCCTTACAACAACAGGTAGTGGCATGCTTGCAGGCACAATTGATGCAAGTGAAGGCTCAGCTGGCACAGAACATGATGGAATCAAGGAACATAGAGAATCAGTGGCCAGGGAATAATGTTAGTGGACAACCAATGAATCCATTTTGTCCAACTTACATGAATCCTATATCTCCTCAGAGTTCTCTTGAGTCAATTGATCATAGCAGCATGAATGATGGAATAATGGGAATGCAAGATATACAAAGCAGAGGGGATTTCTCATTCCAAGCTTGTTCTAAGAAAAGATCATATAACAATAATAATGACTTGGGTGAGCTGCAAGAATTGGCACTGAGGATGATGAGGAACTGA 648 0.4352 MASATGTGTGSGSGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVVACLQAQLMQVKAQLAQNMMESRNIENQWPGNNVSGQPMNPFCPTYMNPISPQSSLESIDHSSMNDGIMGMQDIQSRGDFSFQACSKKRSYNNNNDLGELQELALRMMRN. 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04688 215 PANTHER LOB DOMAIN CONTAINING PROTEIN 14 177 - -
Seca1g04688 215 Pfam Lateral organ boundaries (LOB) domain 18 116 IPR004883 -
Seca1g04688 215 ProSiteProfiles LOB domain profile. 17 120 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04688 Seca-Chr1 148965324 148966771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04688 7 215 AS2 family AT2G42430 55.870 2.17e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca1g04688 LOB 4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04688 K13944 - gmx:100801508 344.739