Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04683 ATGGACTTAATAAGGTACCCATCAGAATTAGAGTACTCCAATAAGAGCTCCACTGATCGATCATCATCATCAGAACAGCTGCAGAACAATGATAATGAGACAGGAAGTGGCAGATCCTATGAGTGCATCTTTTGCAAGAGAGGCTTCACTACAGCACAAGCTTTAGGTGGACACATGAACATTCACAGAAAAGACAAATCCAATAACAAGTCCTCCAAACCAAGTACTTTTCCTCTTTCAAGTTCAATCAACAACTATGCAGCAGATCTAGGGTTCTATTCTGAAATTCCAAGCCATGATCCTTCGGAAGGTAATAAAGTTTATCTTCCTTCAACAGCATGTGGTATCAAACCTAATTCCGATATTGTACAGTATAGTGAGGAAAATCAGCAGGATCACATGTTTGGACAAGATTGGAGGCAGAGAAATTTGAGTTTGTACACTAATAATCCTTTTTGCGATGGTGAAATTAAAGACAAGTTTGAAGATAATAATAATGAAGAGGATGGCTTGGATTTGGAGCTGAGGCTGGGTCCTCATCCTCATCCATAG 552 0.3949 MDLIRYPSELEYSNKSSTDRSSSSEQLQNNDNETGSGRSYECIFCKRGFTTAQALGGHMNIHRKDKSNNKSSKPSTFPLSSSINNYAADLGFYSEIPSHDPSEGNKVYLPSTACGIKPNSDIVQYSEENQQDHMFGQDWRQRNLSLYTNNPFCDGEIKDKFEDNNNEEDGLDLELRLGPHPHP. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04683 183 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Seca1g04683 183 Gene3D Classic Zinc Finger 13 88 - -
Seca1g04683 183 MobiDBLite consensus disorder prediction 1 36 - -
Seca1g04683 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Seca1g04683 183 MobiDBLite consensus disorder prediction 58 79 - -
Seca1g04683 183 SUPERFAMILY beta-beta-alpha zinc fingers 37 67 IPR036236 -
Seca1g04683 183 PANTHER OS07G0101800 PROTEIN 17 181 - -
Seca1g04683 183 Pfam C2H2-type zinc finger 40 64 - -
Seca1g04683 183 MobiDBLite consensus disorder prediction 160 183 - -
Seca1g04683 183 MobiDBLite consensus disorder prediction 10 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04683 Seca-Chr1 148923287 148923838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04683 9 181 C2H2 Transcription Factor Family AT4G17810 32.370 2.10e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04683 - - gmx:102664910 149.828