Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g04682 | ATGGAAGGAAACTATCTGACCAGAAACACACATAAAGGGGAGAGCTTTGGGTTTCATGAGGAGCACACATGGGGAACATCATGGCCTGCAAGAAACTATGCTTGTAGCTTTTGCAAAAGAGAGTTCAAATCTGCTCAAGCTCTTGGTGGTCACATGAATGTTCATAGAAGGGATAGGGCAAGATTGAGATCATCCTTATCCTCATGGGTTTCTCATGATTCTCCTCCTAAACCTAACCCTACCTTTGCTAATAACCCAACAACTACTACTACTCATCTATCCTCACCACCATCATCATATTGTCCCTGTCTCACTTTATCTTCTTCAGTACTGTCCCCAACCACTACCACCACCAGTGCTGGAGATAAGAAACCAAGACTCACATCTTCACACCTTCCTCCTTTGAGTCCTCAAATTAAGATCTTTAGAGGTTGTGCTGATCATGAACACAATAAAGTACTCTTCAAGAATAATAATGAGCACAACATCACTTTGGAGTTGGGAATAGGATTGCTTAATCAACCAAAGGAGAACTTAGATTTGGAGCTAAGATTGGGGCAATTCTAG | 567 | 0.418 | MEGNYLTRNTHKGESFGFHEEHTWGTSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSLSSWVSHDSPPKPNPTFANNPTTTTTHLSSPPSSYCPCLTLSSSVLSPTTTTTSAGDKKPRLTSSHLPPLSPQIKIFRGCADHEHNKVLFKNNNEHNITLELGIGLLNQPKENLDLELRLGQF. | 189 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g04682 | 188 | MobiDBLite | consensus disorder prediction | 65 | 97 | - | - | |
Seca1g04682 | 188 | PANTHER | OS07G0101800 PROTEIN | 16 | 187 | - | - | |
Seca1g04682 | 188 | Pfam | C2H2-type zinc finger | 33 | 57 | - | - | |
Seca1g04682 | 188 | SUPERFAMILY | beta-beta-alpha zinc fingers | 30 | 59 | IPR036236 | - | |
Seca1g04682 | 188 | SMART | c2h2final6 | 33 | 55 | IPR013087 | - | |
Seca1g04682 | 188 | MobiDBLite | consensus disorder prediction | 112 | 133 | - | - | |
Seca1g04682 | 188 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 35 | 55 | IPR013087 | - | |
Seca1g04682 | 188 | Gene3D | Classic Zinc Finger | 9 | 75 | - | - | |
Seca1g04682 | 188 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 33 | 60 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g04682 | Seca-Chr1 | 148909649 | 148910260 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g04682 | 21 | 186 | C2H2 Transcription Factor Family | AT3G23130 | 42.857 | 2.85e-26 | 98.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca1g04682 | zf-C2H2_6 | 5.8e-07 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g04682 | - | - | gmx:102662947 | 151.754 |