Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04682 ATGGAAGGAAACTATCTGACCAGAAACACACATAAAGGGGAGAGCTTTGGGTTTCATGAGGAGCACACATGGGGAACATCATGGCCTGCAAGAAACTATGCTTGTAGCTTTTGCAAAAGAGAGTTCAAATCTGCTCAAGCTCTTGGTGGTCACATGAATGTTCATAGAAGGGATAGGGCAAGATTGAGATCATCCTTATCCTCATGGGTTTCTCATGATTCTCCTCCTAAACCTAACCCTACCTTTGCTAATAACCCAACAACTACTACTACTCATCTATCCTCACCACCATCATCATATTGTCCCTGTCTCACTTTATCTTCTTCAGTACTGTCCCCAACCACTACCACCACCAGTGCTGGAGATAAGAAACCAAGACTCACATCTTCACACCTTCCTCCTTTGAGTCCTCAAATTAAGATCTTTAGAGGTTGTGCTGATCATGAACACAATAAAGTACTCTTCAAGAATAATAATGAGCACAACATCACTTTGGAGTTGGGAATAGGATTGCTTAATCAACCAAAGGAGAACTTAGATTTGGAGCTAAGATTGGGGCAATTCTAG 567 0.418 MEGNYLTRNTHKGESFGFHEEHTWGTSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSLSSWVSHDSPPKPNPTFANNPTTTTTHLSSPPSSYCPCLTLSSSVLSPTTTTTSAGDKKPRLTSSHLPPLSPQIKIFRGCADHEHNKVLFKNNNEHNITLELGIGLLNQPKENLDLELRLGQF. 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04682 188 MobiDBLite consensus disorder prediction 65 97 - -
Seca1g04682 188 PANTHER OS07G0101800 PROTEIN 16 187 - -
Seca1g04682 188 Pfam C2H2-type zinc finger 33 57 - -
Seca1g04682 188 SUPERFAMILY beta-beta-alpha zinc fingers 30 59 IPR036236 -
Seca1g04682 188 SMART c2h2final6 33 55 IPR013087 -
Seca1g04682 188 MobiDBLite consensus disorder prediction 112 133 - -
Seca1g04682 188 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Seca1g04682 188 Gene3D Classic Zinc Finger 9 75 - -
Seca1g04682 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04682 Seca-Chr1 148909649 148910260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04682 21 186 C2H2 Transcription Factor Family AT3G23130 42.857 2.85e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g04682 zf-C2H2_6 5.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04682 - - gmx:102662947 151.754