Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04669 ATGACGGCTGAGAGATTTTGTGAAAACGAAGAAGACAAGGCTATGTTGGAATCTGTATTGGGTACAGAAGCTGTTGTCTTCTTTAGTTCGGCGGTTTCCAATGATATCTTTTCCGATGTTATGGTTCCACCTGGCCCTGATATGGGTATTCACCAGCGGTTATGCCACCTTGTTGAGGTGTCCAAGTGGGACTATGCCATTTTGTGGCAGGTTGCTGGCTTGAAATCTGGTGGCTATGTCTTGAAATGGGGTGATGGGCATTGTCAGGATCCTAAAGGGGTTCAAAGGAGTGAGCTTGAGGAGAAGGAGGATGATGTCAAGAGGAAGGTGTTGCAGAAGCTTCATGCTTGCTGTGGTGGATCTGACTCAAAAGATGCTATTTTTACAAGGTTGGATAGGATCCCTGATGTGCAAATGTTTTACTTGACCTCAATGTATTATGTAATTGGTTTTAATTCACAGTGTGGCCCTGGCAGTTCTTTTAAGTGTGGTAAATCAGTTTGGGTTTCTGACACTGCTAGTTGTTTAAACCAATTTGAATCAAGATCATTTCTTGGGAAATTGGCTGGTTTTCAAACAGTTGTTTTTGTACCTCTCAAAGGTGGGGTTGTTGAGCTTGGTTCAAAGGAAATGATTCCTGAAGAGCAGGGTGTTTTGGATATGGTCAGAACAACATTTTGGGAATCTAGTTCTGGACAGGCAAAGGTGTTACCCAAGATTTTTGGGCATGAGTTAAGCCTTGGGGATTCAAAATCTCAGTCCATAACTATTAGTTTCTCTCCAAAAGTGGAAGATGATTCTGGTTTCACTTCTGACTCTTATGAAGTACAAGCGCTAGGGGCAAATCATGCTTATGGAAATTCTTCCAATGGGTGCATAGGTGATAGTAATGAGGCTAAAATGTTCCCCCAGTTAAATCAAATGATTCCTGGGAATTTTAATCCTCAAGCAAGGGTTTCTTGTATAGATTTGGGTAATGAAGACTCATCCTCACCTCATCCGGATGAGCGGAAGCCTAGAAAAAGAGGGAGAAAGCCTGCCAATGGGAGAGAGGAACCACTGAATCATGTTGAAGCAGAGAGGCAAAGACGGGAGAAGCTTAACCAGAGATTTTATGCCTTAAGAGCTGTTGTTCCTAATATATCTAAAATGGACAAGGCATCTCTGCTTGGTGATGCTATTACCCATATCACTGATCTCCAGAAGAAGATCAAGATGTTGGAAGCTGAAAAGGACATAGGTAACAATAAGGACCAGCAGTTTCCATTGCCGGATATCGATTTTCAGCCTCGACAGGATGATGCAGTTGTGAGAGTGAGCTGCCCCTTGGATATTCACCCAGTTTCTGGAATTGTTAGAATGTTAAGAGAACATCAAATTGTAGCTCAAGAGTCCAGTGTTTCAACTGCACAAGATAAGGTAATTCATACATTCTCCATAAAAACTCAAGGTGGGGAGGCTGCTGCTCTACAGTTGAAAGAAAAGCTTGAAGCATCTCTATCCAAAAATTGA 1512 0.4226 MTAERFCENEEDKAMLESVLGTEAVVFFSSAVSNDIFSDVMVPPGPDMGIHQRLCHLVEVSKWDYAILWQVAGLKSGGYVLKWGDGHCQDPKGVQRSELEEKEDDVKRKVLQKLHACCGGSDSKDAIFTRLDRIPDVQMFYLTSMYYVIGFNSQCGPGSSFKCGKSVWVSDTASCLNQFESRSFLGKLAGFQTVVFVPLKGGVVELGSKEMIPEEQGVLDMVRTTFWESSSGQAKVLPKIFGHELSLGDSKSQSITISFSPKVEDDSGFTSDSYEVQALGANHAYGNSSNGCIGDSNEAKMFPQLNQMIPGNFNPQARVSCIDLGNEDSSSPHPDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIKMLEAEKDIGNNKDQQFPLPDIDFQPRQDDAVVRVSCPLDIHPVSGIVRMLREHQIVAQESSVSTAQDKVIHTFSIKTQGGEAAALQLKEKLEASLSKN. 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04669 503 Coils Coil 390 417 - -
Seca1g04669 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 351 400 IPR011598 GO:0046983
Seca1g04669 503 SMART finulus 357 406 IPR011598 GO:0046983
Seca1g04669 503 MobiDBLite consensus disorder prediction 322 362 - -
Seca1g04669 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 354 417 IPR036638 GO:0046983
Seca1g04669 503 MobiDBLite consensus disorder prediction 329 362 - -
Seca1g04669 503 Pfam Helix-loop-helix DNA-binding domain 355 401 IPR011598 GO:0046983
Seca1g04669 503 CDD bHLH_AtAIB_like 348 411 - -
Seca1g04669 503 Gene3D - 344 416 IPR036638 GO:0046983
Seca1g04669 503 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 226 IPR025610 -
Seca1g04669 503 PANTHER MYC 46 499 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04669 Seca-Chr1 148755252 148756763 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04669 3 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 48.317 1.15e-157 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g04669 bHLH-MYC_N 5e-40 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04669 - - gmx:100819968 736.873