Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04666 ATGACGACTGAGAGATTTTGTGAAAACAAAGAAGACAAGGCTATGTTGGAATCTGTATTGGGTACAGAAGCTGTTGTCTTCTTTAGTTCGGTGGTTTCCAATGATATCTTTTCCGATGTTATGGTTCCACCTGGCCCTGATATGGGTATTCACCAGCGGTTATGCCACCTTGTTGAGGTGTCCAAGTGGGACTATGCCATTTTGTGGCAGGTTGCTGGCTTGAAATCTGGTGGCTATGTCTTGAAATGGGGTGATGGGCATTGTCAGGATCCTAAAGGGGTTCAAAGGAGTGAGCTTGAGGAGAAGGAGGATGATGTCAAGAGGAAGGTGTTGCAGAAGCTTCATGCTTGCTGTGGTGGATCTGACTCAAAAGATGCTATTTTTACAAGGTTGGATAGGATCTCTGATGTGCAAATGTTTTACTTGACCTCAATGCTAAGTTTTCTTACCCTTATCTCTTGTCAATTTATTTATACTAATCAAAGGGTGTTGAAAAACTGTTCTGATATTTTAAAAGCAAGAAACCTTTTAAAAGATATTTTCAGAATCCGTCTTAAGAAACTTCAGACAGCCCCTTAA 579 0.4093 MTTERFCENKEDKAMLESVLGTEAVVFFSSVVSNDIFSDVMVPPGPDMGIHQRLCHLVEVSKWDYAILWQVAGLKSGGYVLKWGDGHCQDPKGVQRSELEEKEDDVKRKVLQKLHACCGGSDSKDAIFTRLDRISDVQMFYLTSMLSFLTLISCQFIYTNQRVLKNCSDILKARNLLKDIFRIRLKKLQTAP. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04666 192 PANTHER MYC 46 149 IPR045084 GO:0003700|GO:0006355
Seca1g04666 192 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 148 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04666 Seca-Chr1 148751262 148751840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04666 4 145 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 43.448 4.86e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04666 - - gmx:100782107 179.874