Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04653 ACAAAGAAATTTCAGCAATGCTCACACACATCCAAAACCTTCGCTGCAAGTTACGTTATACACAGATCCATCAACCATTCCAATTTCCATTCCCAAGCCATGGCAACAGAAGAAGTAGTGGTGACTGTGCCCATCGAAGAAGTGGTGCCGGAGGAGGTGGCGACCGACGTCAACCCACCGGCGGAGGAAGAGAAGAATGAGTCTGACAAGCCCGATCCCAAGCCCAAAAAGGCAGGCAAGGAGCCCAAGCCTAAGAAGGCTCCTAAGGCCCGGACTACTCCATCTCATCCTTCTTACGAAGTGATGATCAAGGATGCAATTGTGACACTGAAGGAGAAGAACGGTTCAAGCCTGTATGCAATTGCCAAGGTCCTTGAGGAGAAGCATAAGCAGCTTCCTTCCAACTTCAGGAAGCTCTTGTTGTACCATTCCAAGAAGCTCGTTGCTTCTGCAAAGCTTGTCAAGGTCAAGAGTTCCTTCAAGCTTCCACCGGTCAAGTCTTCCGCTCCCAAGCCTGCTGCCGCGAAGAAGAAACCTGCAGCAGCTGCTAAGTCAAAGCCCAAGTCAAAGCCCAAGTCTCAGCCCAAGTCTAAGGCCAGCAAGACAACCAAGACGACTAAGTCAACCGCAACTAAGTCACCTGCCAAGGCGAAGCCAGCTGCCAAACCCAAGCCGAAGCCAAAGGCAAAGCCTGCTGCCAAGCCCAAACCTGCTGCCAAGCCCAAGCCTGCTGCTAAGCCCAAGGCTACCAAGGCTGCTCCTGCCAAGGCTAAGTCAACGGCTGCCGCAAAGCCTAAGGCTGCTGCGAAGGCAAAACCCGCGACAAAGGCAAAGCCGAAGCCCAAGGAGAGACCCGCCAAGGCTTCGAGGACGTCAACTAGAACATCCCCTGGGAAGAAAGCCCCTGCTCCCAAACCGGCGGCGAAGAAGGCTGCACCGGCGAAGAAAGCTCCGGCAAAAAGTGCAAAGCCCAAGAGTGTAAAGTCGCCGGCAAAGAAGGCTGCGGCGAAGAGGGGAAGGAAGTGA 1026 0.54 TKKFQQCSHTSKTFAASYVIHRSINHSNFHSQAMATEEVVVTVPIEEVVPEEVATDVNPPAEEEKNESDKPDPKPKKAGKEPKPKKAPKARTTPSHPSYEVMIKDAIVTLKEKNGSSLYAIAKVLEEKHKQLPSNFRKLLLYHSKKLVASAKLVKVKSSFKLPPVKSSAPKPAAAKKKPAAAAKSKPKSKPKSQPKSKASKTTKTTKSTATKSPAKAKPAAKPKPKPKAKPAAKPKPAAKPKPAAKPKATKAAPAKAKSTAAAKPKAAAKAKPATKAKPKPKERPAKASRTSTRTSPGKKAPAPKPAAKKAAPAKKAPAKSAKPKSVKSPAKKAAAKRGRK. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04653 341 CDD H15 93 164 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca1g04653 341 PANTHER HISTONE H1 69 321 - -
Seca1g04653 341 PRINTS Histone H5 signature 230 247 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca1g04653 341 PRINTS Histone H5 signature 252 271 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca1g04653 341 PRINTS Histone H5 signature 82 103 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca1g04653 341 PRINTS Histone H5 signature 191 205 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca1g04653 341 PRINTS Histone H5 signature 109 126 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca1g04653 341 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 95 164 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca1g04653 341 MobiDBLite consensus disorder prediction 58 79 - -
Seca1g04653 341 MobiDBLite consensus disorder prediction 181 197 - -
Seca1g04653 341 MobiDBLite consensus disorder prediction 326 341 - -
Seca1g04653 341 Gene3D - 91 169 IPR036388 -
Seca1g04653 341 MobiDBLite consensus disorder prediction 51 100 - -
Seca1g04653 341 Pfam linker histone H1 and H5 family 96 162 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca1g04653 341 MobiDBLite consensus disorder prediction 198 213 - -
Seca1g04653 341 SUPERFAMILY "Winged helix" DNA-binding domain 93 176 IPR036390 -
Seca1g04653 341 MobiDBLite consensus disorder prediction 219 235 - -
Seca1g04653 341 SMART h15plus2 93 159 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca1g04653 341 MobiDBLite consensus disorder prediction 155 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04653 Seca-Chr1 148642144 148643264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04653 92 172 Single Myb Histone (SMH) Gene Family AT1G72740 33.333 1.75e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04653 K11275 - gmx:100795994 109.383