Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04652 ATGCCTGTTGACGCCCTTCCTTCTCCACCGCCGACCAAATCCTTTCCCCATTTCAGAGGCGTCCGTAAGCGTCCTTGGGGCCGCTTCGCCGCCGAGATCCGCGATCCTTGGAAGAAGACCCGCAAGTGGCTCGGCACCTTTGACACCGCCGAGGAAGCCGCCAGGGCCTACGACAACGCTGCCATGAGCCTCCGTGGCCCCAAGGCAAAGACGAACTTCTCCTACGACGCCGCCCCCGAGGCCTCCGGCAACGTGTTCGGGAGGCAGCAGGTGGAGTTTTGGCGCCCGCCGGTTTACTTCGCCGCCGCCGGAATGCCGGTGAGGTCGGAGTACAAGGGATACAAGTTGGAGAACATTATGGTGAACAAAGAGGTGGAGAAGATACAGACGAATGAGAAGAAGAGCAAGAAGCCGTTCTTGTTCGACCTTAACCAGCCGGCGCCGCTCCTCTGA 453 0.6049 MPVDALPSPPPTKSFPHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDNAAMSLRGPKAKTNFSYDAAPEASGNVFGRQQVEFWRPPVYFAAAGMPVRSEYKGYKLENIMVNKEVEKIQTNEKKSKKPFLFDLNQPAPLL. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04652 150 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Seca1g04652 150 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Seca1g04652 150 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Seca1g04652 150 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Seca1g04652 150 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Seca1g04652 150 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Seca1g04652 150 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 106 - -
Seca1g04652 150 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Seca1g04652 150 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Seca1g04652 150 CDD AP2 16 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04652 Seca-Chr1 148559573 148560025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04652 18 85 AP2-EREBP Transcription Factor Family AT1G50640 76.471 1.38e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca1g04652 AP2 7.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04652 K09286 - gmx:100816599 182.57