LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g04651	ATGGAGGAGGTTGAAGAAGCTAACAGAGCAGCTGTTGAGAGCTGTCATAGAGTTATAAGCATGTTATCTCAGCCCCAGGATCATGTTCAGTATAGGAATTTAATGGTGGAAACTGAGGAGGCTGTAGTGAGGTTCAAGAAAGTTGTTTCTCTACTCAGTAATGGTTTAGGTCATGCAAGAGTCAGGAAGCTCAAAAAACTTCAAATCCCTTTTTCACAAAGTATCCTCTTGGACAACCCAAATTGCAAAACCAATCATCAATCAAAAAATCTGCAGTTTCTTCAAACTAGTTTTCCTGATAATTCAGTTCAGGAATTGGGTTCAAGCGTCAGAAATTCACTCTGTCTGGGAAACCCATCTTTGAAATTGAGCTCCAGTGGGAAAAGTTCTCTTCACCTTACCCCACAAACCTCATCCACACACTATCACATCCTTCAGCAGCAGCAGCAACAGCAAAGATTACTGTTGCAACAGCAACAATTGAAACATCAAGCAGAAATGATGTTCCGGAGGAACAATAGTGTCATAAGCCTGAATTTTGATACCTCTAGCTGCACACCATCAATGTCATCTACTAGGTCTTTCGTATCTTCCTTGAGCATAGATGGAAGCGTAGCTAACTTGGATGGAAGTGCCTTCCATTTAGTAGGAGCCGCACACTCCTCTGATCAGAATTCACAACAGCACAAGAGAAAATGTTCTGCCAGAGGTGATGAGGGTAGCAATAAATGTGGGAGCAGTTCTAGATGCCATTGCTCAAAGAAGAGTCCATGCATCTTTTGCAGGAAACATAGAGTGAAAAGATCAATTAAGGTTCCTGCTATCAGCAACAAGCTTGCAGATATCCCTCCGGATGATTACTCATGGAGAAAGTACGGCCAGAAGCCAATCAAGGGTTCACCTCACCCTAGGGGATACTATAAGTGCAGCAGTGTGAGAGGCTGCCCAGCTAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTTCCATGCTAATTGTTACCTATGAAGGCGATCACAACCACCCCAAATTACCAACACAATCAGCAAATGCATGA	1056	0.4328	MEEVEEANRAAVESCHRVISMLSQPQDHVQYRNLMVETEEAVVRFKKVVSLLSNGLGHARVRKLKKLQIPFSQSILLDNPNCKTNHQSKNLQFLQTSFPDNSVQELGSSVRNSLCLGNPSLKLSSSGKSSLHLTPQTSSTHYHILQQQQQQQRLLLQQQQLKHQAEMMFRRNNSVISLNFDTSSCTPSMSSTRSFVSSLSIDGSVANLDGSAFHLVGAAHSSDQNSQQHKRKCSARGDEGSNKCGSSSRCHCSKKSPCIFCRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCLEEPSMLIVTYEGDHNHPKLPTQSANA.	352

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g04651	351	ProSiteProfiles	WRKY domain profile.	278	344	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca1g04651	351	Pfam	Plant zinc cluster domain	230	281	IPR018872	-
	Seca1g04651	351	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	2	349	IPR044810	GO:0003700
	Seca1g04651	351	Gene3D	WRKY domain	269	345	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Seca1g04651	351	MobiDBLite	consensus disorder prediction	219	245	-	-
	Seca1g04651	351	Pfam	WRKY DNA -binding domain	285	342	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca1g04651	351	SMART	WRKY_cls	283	343	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca1g04651	351	FunFam	WRKY transcription factor 65	267	344	-	-
	Seca1g04651	351	SUPERFAMILY	WRKY DNA-binding domain	281	343	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g04651	Seca-Chr1	148540049	148541891	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g04651	1	348	WRKY Transcription Factor Family	AT2G30590	55.670	5.44e-127	367

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Seca1g04651		WRKY	1.3e-25	CL0274