Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04648 ATGTCGAATCAGGTGGTGAGAGTAAGAAGGGACACGATTACAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGGGAAGCCACAACTATATCTGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTTTGATAAAATTACAGATGAGGAATTGGAATGCTGTCCAATATGCAACATTGATTTGGGTTGTGTTCCACTTGAGAAACTAAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTGAAGGGAAGAAAGGTCAAGGCACCTGAAGTTGTCACCTCATTACCATTGCCAGCTAGAAGAAAGGAGAGATCTCTTTCATCTTTGGTGGTCAGCACACCAAGGGTATCTGCACAGGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTAGTGGTCTGCGGTCCTCTAGTTTTTCCATTGAAAAGCCTGTTAAAAAAGAGGAAGACTTACTAGAAGATCATCCTGAGAGTTCAAGCTCACCTGACACTTCAAACAAGTTTGCTCAGAATTCTGGACAGGTAAGTTTGTCCCCTTGTGAGGGTAGTCAATCCATACCTAATAAAGAAACAGAGAATGGTGCGGAACCATGGGATGCAAAATTGGATCTATGGAAACCTTTGAATTGTTTAGTAGAGGTTGCAAGTAGGAGTAAATCTTTCAAGTCTAGTGTGCAAGGGTCTGATGCTAAACTAGAACCCATTCAAGTACATGAGAGTGGCTCTCAAGTGCCGAAAACCAAAAATAAGGAAAATAAACGTAAGGCAAAAGTTGAGGATGAAAAGATTAGCCCTTATCCTGTCTCTTCAGATGCAGCAAAACCCAATAAATTGCGAAGAATACGCAGGAAAAAGGAGCCTGCTCTTGGAGAATCAGCCATATCACCCCAAGCTGTGCTGGATTCTGCCAGCAATAAACACTTAAGGACTGGTCCAATTTGGTTCTCCTTAGTTGCTTCTGAAAACCAGGAAGGAGAAGCGCCCTTGCCCCAAATTCCTACAAGTTATGTGAGAATAAAGGATGGAAGCGTACCTGTCTCATTTATCCAAAAATACCTAATGAAGAAACTAGATCTGACCAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAACCAGTGCTCCCTACACTGCAGCTACATAATTTAGTTGAGTTGTGGCTGGATACAACAGCATCCACATCACAGAGAATTCCAGCAACAATTGGGTCCTCAGCAAAGGATTTTGTCATGGTACTGGCTTATGCTCGGAAGGTTCCACACACTTGA 1293 0.4292 MSNQVVRVRRDTITACMTCPLCNKLFREATTISECLHTFCRKCIFDKITDEELECCPICNIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEVVTSLPLPARRKERSLSSLVVSTPRVSAQATMTGRRTKPTRKASGLRSSSFSIEKPVKKEEDLLEDHPESSSSPDTSNKFAQNSGQVSLSPCEGSQSIPNKETENGAEPWDAKLDLWKPLNCLVEVASRSKSFKSSVQGSDAKLEPIQVHESGSQVPKTKNKENKRKAKVEDEKISPYPVSSDAAKPNKLRRIRRKKEPALGESAISPQAVLDSASNKHLRTGPIWFSLVASENQEGEAPLPQIPTSYVRIKDGSVPVSFIQKYLMKKLDLTSETEVEIKCMGQPVLPTLQLHNLVELWLDTTASTSQRIPATIGSSAKDFVMVLAYARKVPHT. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04648 430 SMART ring_2 19 59 IPR001841 -
Seca1g04648 430 SUPERFAMILY RING/U-box 13 83 - -
Seca1g04648 430 MobiDBLite consensus disorder prediction 252 272 - -
Seca1g04648 430 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Seca1g04648 430 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Seca1g04648 430 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Seca1g04648 430 MobiDBLite consensus disorder prediction 149 165 - -
Seca1g04648 430 MobiDBLite consensus disorder prediction 112 147 - -
Seca1g04648 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
Seca1g04648 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 426 IPR044807 GO:0004842
Seca1g04648 430 MobiDBLite consensus disorder prediction 230 282 - -
Seca1g04648 430 MobiDBLite consensus disorder prediction 166 199 - -
Seca1g04648 430 MobiDBLite consensus disorder prediction 109 202 - -
Seca1g04648 430 CDD RING-HC_PCGF 17 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04648 Seca-Chr1 148483638 148490848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04648 2 348 C3H Transcription Factor Family AT2G30580 53.736 1.10e-114 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04648 K16277 - gmx:100793731 753.051