Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04647 ATGGCTCTTGCTGGGTCTTCAGTGGAGCTTCAAGGTTCTTCTATAAAGAAGAAAACTGCTGTTTCAAGAAGCTGGATTTTGCTAGACCATGATGGCAGAGGCACTGTACTAGATGTGGATAAGTATGCTATTATGCGCCTGGTTGAAATTCACGCAAGGGATCTTCGAATTCTGGATCCTCTCCTTTCATATCCTTCAACCATTCTAGGCAGAGAGAAAGTCATTGTTCTCAATTTAGAGGCAAACACTCTGTTTCTGTTCAACCATAACTTGTTTTGTTTTTCAACTTTTATTTTTATGTCATATAATTTGGGTTTGTTTTTGCAGCACATCAAAGCTATTATCACTGCGGAAGAGGTGTTGCTTAGAGACCCAATGGATGATGATGTTGTGCCTATTGTTGAAGAACTTAGAAGACGGTTGCCCCAAGTAAATGCTGCAGGCCAAGGCCAAGGAGAAGAAGAGCCTAGTGTTCAAGATGGTGAAGAATTTCCATTTGAGTTCAGGGCCTTAGAAGTTGTGTTAGAGGCAATTTGTAGTTTCCTTGATGCAAGAACAAAAGAGTTAGAGACTGCTGCTTATCCTGCTTTGGATGAACTAACCTCTAAGATCAGCAGTCGTAATTTGGATCGAGTGAGAAAATTGAAAAGTGCAATGACAAGGTTGAATAATCGAGTTCAAAAGATAAGAGATGAACTAGAAAATCTACTTGATGATGCTGATGACATGGCTGATCTTTACTTATCAAGAAAGTTGGCTGTTTCATCCTCTCCCGAAAGTAGCTCTGATGCACCCAATTGGAATCATAGCTCTCCAAATCCGGGTTCAAAAATACACAGATCAAGCAGAACAAGTGCAACAACAACAGTTCATGGGGAGAATGATGTTGAGGAGCTAGAAATGTTACTTGAGGCCTATTTCATGCAAATTGATGGCACATTAAACAAATTGACCACATTGCGGGAATATATTGATGACACAGAAGATTACATTAACATACAGCTTGAGCTCTTCCTTAGTTCTGGGACTGTCTGTCTATCCGTATATTCCTTGGTGGCTGCAATATTTGGTATGAACATTCCATATACATGGAAAGAAGGTCACGGATATATGTTTAAATGGGTGGTGATCTTTGCGGGAATGGTTTGTGCATCCTTGTTTTTGTCCATAGCATCTTATGCCCGACGCAAAGGCCTTGTTGGGTCTTGA 1209 0.4045 MALAGSSVELQGSSIKKKTAVSRSWILLDHDGRGTVLDVDKYAIMRLVEIHARDLRILDPLLSYPSTILGREKVIVLNLEANTLFLFNHNLFCFSTFIFMSYNLGLFLQHIKAIITAEEVLLRDPMDDDVVPIVEELRRRLPQVNAAGQGQGEEEPSVQDGEEFPFEFRALEVVLEAICSFLDARTKELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLNNRVQKIRDELENLLDDADDMADLYLSRKLAVSSSPESSSDAPNWNHSSPNPGSKIHRSSRTSATTTVHGENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLELFLSSGTVCLSVYSLVAAIFGMNIPYTWKEGHGYMFKWVVIFAGMVCASLFLSIASYARRKGLVGS. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04647 402 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 12 400 IPR039204 -
Seca1g04647 402 MobiDBLite consensus disorder prediction 257 291 - -
Seca1g04647 402 CDD Mrs2_Mfm1p-like 25 399 IPR039204 -
Seca1g04647 402 Gene3D Magnesium transport protein CorA, transmembrane region 131 337 - -
Seca1g04647 402 FunFam Magnesium transporter MRS2-5 140 338 - -
Seca1g04647 402 Coils Coil 212 246 - -
Seca1g04647 402 Gene3D - 9 94 - -
Seca1g04647 402 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 338 388 IPR045863 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04647 Seca-Chr1 148475176 148478789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04647 14 375 MRS2 Gene Family AT5G64560 68.063 5.35e-151 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04647 K16075 - gmx:100799368 571.237