Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04643 ATGGATTTAAATAGTGATGATTCGGCTGTTAATCTGGATGATGATAGAGACCTTAGTTTTAGTGATTCTTCTAGCTCTAGCGATGATGAAATTCATAATGAAAATGATAGAGTTATTGATTCTGATGAAGTTAATGAAGAAGGGGGAGACAGTGATCAGGGAAATGATATTTTGGATGCAGAAGTTGGAGGGGGTGTGTCAAGGAGGATAATTGATTTGACAATTGATGATATATGTGCATTGGAATTCTGTAGTGAAAATGATGCTTTCAATTTTGACTTTTCTTATGCAAGATGTCATGGTTTTGCTGTGAGGAGGGATAATGTAATTAAAGACAGTAAAGGTATGCTCATAATGCGACAGTTCTTATGTAGTAGGGCTGGTTTGAGGGACAAAAAGCATTTGATTAGGTTAAATCGGAAAAAGGAACATAGGCCTCTAACTCGAACAAATTGTCAAGCTAAGTTGAGGGTTCGGTTTGATTATAAGACTGGGAAATATAAGGTTGTTTCCTTTTTAGACTCCCATAACCATGAATTGACCCCTGCTAAATTTGTACCTTTAATTCCTGCATATCGTGGTTTGAGTGATGGGGACAAAGCCCAAGTTGATGCATTGCATTCTCATGGTGTTAGACCATGTCAGATAATGGGTTTTCTTTAG 663 0.371 MDLNSDDSAVNLDDDRDLSFSDSSSSSDDEIHNENDRVIDSDEVNEEGGDSDQGNDILDAEVGGGVSRRIIDLTIDDICALEFCSENDAFNFDFSYARCHGFAVRRDNVIKDSKGMLIMRQFLCSRAGLRDKKHLIRLNRKKEHRPLTRTNCQAKLRVRFDYKTGKYKVVSFLDSHNHELTPAKFVPLIPAYRGLSDGDKAQVDALHSHGVRPCQIMGFL. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04643 220 MobiDBLite consensus disorder prediction 1 58 - -
Seca1g04643 220 Pfam FAR1 DNA-binding domain 94 181 IPR004330 -
Seca1g04643 220 MobiDBLite consensus disorder prediction 9 44 - -
Seca1g04643 220 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 13 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04643 Seca-Chr1 148375097 148375759 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g04643 FAR1 2.3e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04643 - - ccaj:109794460 203.756